Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0031 ATGGCAGACTACGACCTAACTCCACGCATCGCTCCCAACCTCGATCGTCACCTCGTCTTCCCACTCCTCGAGTTTCTTCAAGAGCGACAGTTCTATCCTGATGAACAGATCCTCAAGGCCAAGATCGAGCTTCTTAACAAGACGAACATGGTCGACTACGCCATGGACATCCACAAGTCCCTGTACCACACCGAAGACGTCCCTCAAGATATGGTTGAGAGGAGGGCAGAGGTGGTAGCGCGGCTCAAGTCTCTAGAGGAGTCGGCGGCGCCTCTCGTTTCATTCTTGCAGAATGCAGCTGCTGTTCAGGAATTGAGGGCTGACAAGCAGTATAATCTTCAAATGCTCAAGGAGCGCTACCAGATCGGTCCAGAGCAAATAGAGGCGTTATATCAGTATGCCAAGTTTCAATTCGAATGTGGAAATTACTCTGGTGCTGCTGATTATTTGTATCAGTATAGGGCCTTGTGCACAAATAGTGAAAGGAGTTTAAGTGCATTATGGGGAAAGTTGGCAGCTGAGATATTGATGCAGAACTGGGATATTGCTCTTGAAGAGCTTAATCGGTTGAAAGAAATTATCGACTCTAAGAGTTTTTCATCTCCTATGATTCAGGTGCAGAGCAGAATATGGCTAATGCATTGGAGTCTATTCATCTTTTTCAACCATGATAATGGTAAAACACAGATCATTGACCTATTTAATCAGGACAGGTATATAAATGCTATTCAAACCAATGCTCCCCATCTTTTGCGTTATCTGGCAACTGCATTTATTGTCAACAAAAGGAGAAGACCGCAGTTCAAAGATTTTATAAAAGTTGTTCAGCAAGAGCAGTACTCCTTTAAGGATCCTATCACTGAATTTCTGGCTTGTGTTTATGTCAGTTTTGACTTTGATGGGGCACAAAAGAAGATGAAAGAATGTGAAGAAGTGATATTGAATGACCCTTTCCTAGGAAAACGAGTTGAAGAAGGCAACTTGTCTGCTGTTCCTTTGAGAGACGAGTTTCTGGAAAATGCTCGTCTATTTATCTTTGAGACATATTGCCGAATCCATCAACGTATTGACATGAGTGTCCTGGCTGAGAAACTAAACTTGAATTATGAGGATGCGGAGAGATGGATTGTTAATCTTATCCGGACCTCAAAGCTTGATGCAAAAATTGATTCAGAATCGGGATATGTAATCATGGAACCAAATCATCCCAATGTTTATGAGCAGCTCATAGACCACTCCAAGGCATTATCCGGGCGAACATACAAACTTGTTGGCCAGCTTCTGGAACATGCTCAAGCACAAGTGGCTCGATGA 1314 43.23 MADYDLTPRIAPNLDRHLVFPLLEFLQERQFYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRAEVVARLKSLEESAAPLVSFLQNAAAVQELRADKQYNLQMLKERYQIGPEQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSSPMIQVQSRIWLMHWSLFIFFNHDNGKTQIIDLFNQDRYINAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVVQQEQYSFKDPITEFLACVYVSFDFDGAQKKMKECEEVILNDPFLGKRVEEGNLSAVPLRDEFLENARLFIFETYCRIHQRIDMSVLAEKLNLNYEDAERWIVNLIRTSKLDAKIDSESGYVIMEPNHPNVYEQLIDHSKALSGRTYKLVGQLLEHAQAQVAR 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 197497 200404 + Conep03aG0003300.1 Cone3ag0031 433490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0031 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 IPR000717 -
Cone3ag0031 437 SMART eIF3_N_2 5 137 IPR019010 -
Cone3ag0031 437 Gene3D - 224 433 - -
Cone3ag0031 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 434 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
Cone3ag0031 437 FunFam Eukaryotic translation initiation factor 3 subunit E 228 433 - -
Cone3ag0031 437 SUPERFAMILY TPR-like 120 191 IPR011990 GO:0005515(InterPro)
Cone3ag0031 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cone3ag0031 437 SUPERFAMILY Winged helix DNA-binding domain 333 403 IPR036390 -
Cone3ag0031 437 Pfam PCI domain 306 399 IPR000717 -
Cone3ag0031 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Cone3ag0031 437 CDD eIF3E 4 429 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cone3ag0031 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Cone3ag0031 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0625 Cone-Chr19:5433879 Cone3ag0031 Cone-Chr3:197497 2.50E-294 dispersed
Cone3ag0031 Cone-Chr3:197497 Cone10ag0022 Cone-Chr10:173508 3.27E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0031 K03250 - mdm:103415044 825.083