Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag0031 | ATGGCAGACTACGACCTAACTCCACGCATCGCTCCCAACCTCGATCGTCACCTCGTCTTCCCACTCCTCGAGTTTCTTCAAGAGCGACAGTTCTATCCTGATGAACAGATCCTCAAGGCCAAGATCGAGCTTCTTAACAAGACGAACATGGTCGACTACGCCATGGACATCCACAAGTCCCTGTACCACACCGAAGACGTCCCTCAAGATATGGTTGAGAGGAGGGCAGAGGTGGTAGCGCGGCTCAAGTCTCTAGAGGAGTCGGCGGCGCCTCTCGTTTCATTCTTGCAGAATGCAGCTGCTGTTCAGGAATTGAGGGCTGACAAGCAGTATAATCTTCAAATGCTCAAGGAGCGCTACCAGATCGGTCCAGAGCAAATAGAGGCGTTATATCAGTATGCCAAGTTTCAATTCGAATGTGGAAATTACTCTGGTGCTGCTGATTATTTGTATCAGTATAGGGCCTTGTGCACAAATAGTGAAAGGAGTTTAAGTGCATTATGGGGAAAGTTGGCAGCTGAGATATTGATGCAGAACTGGGATATTGCTCTTGAAGAGCTTAATCGGTTGAAAGAAATTATCGACTCTAAGAGTTTTTCATCTCCTATGATTCAGGTGCAGAGCAGAATATGGCTAATGCATTGGAGTCTATTCATCTTTTTCAACCATGATAATGGTAAAACACAGATCATTGACCTATTTAATCAGGACAGGTATATAAATGCTATTCAAACCAATGCTCCCCATCTTTTGCGTTATCTGGCAACTGCATTTATTGTCAACAAAAGGAGAAGACCGCAGTTCAAAGATTTTATAAAAGTTGTTCAGCAAGAGCAGTACTCCTTTAAGGATCCTATCACTGAATTTCTGGCTTGTGTTTATGTCAGTTTTGACTTTGATGGGGCACAAAAGAAGATGAAAGAATGTGAAGAAGTGATATTGAATGACCCTTTCCTAGGAAAACGAGTTGAAGAAGGCAACTTGTCTGCTGTTCCTTTGAGAGACGAGTTTCTGGAAAATGCTCGTCTATTTATCTTTGAGACATATTGCCGAATCCATCAACGTATTGACATGAGTGTCCTGGCTGAGAAACTAAACTTGAATTATGAGGATGCGGAGAGATGGATTGTTAATCTTATCCGGACCTCAAAGCTTGATGCAAAAATTGATTCAGAATCGGGATATGTAATCATGGAACCAAATCATCCCAATGTTTATGAGCAGCTCATAGACCACTCCAAGGCATTATCCGGGCGAACATACAAACTTGTTGGCCAGCTTCTGGAACATGCTCAAGCACAAGTGGCTCGATGA | 1314 | 43.23 | MADYDLTPRIAPNLDRHLVFPLLEFLQERQFYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRAEVVARLKSLEESAAPLVSFLQNAAAVQELRADKQYNLQMLKERYQIGPEQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSSPMIQVQSRIWLMHWSLFIFFNHDNGKTQIIDLFNQDRYINAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVVQQEQYSFKDPITEFLACVYVSFDFDGAQKKMKECEEVILNDPFLGKRVEEGNLSAVPLRDEFLENARLFIFETYCRIHQRIDMSVLAEKLNLNYEDAERWIVNLIRTSKLDAKIDSESGYVIMEPNHPNVYEQLIDHSKALSGRTYKLVGQLLEHAQAQVAR | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 197497 | 200404 | + | Conep03aG0003300.1 | Cone3ag0031 | 433490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag0031 | 437 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 332 | 416 | IPR000717 | - | |
Cone3ag0031 | 437 | SMART | eIF3_N_2 | 5 | 137 | IPR019010 | - | |
Cone3ag0031 | 437 | Gene3D | - | 224 | 433 | - | - | |
Cone3ag0031 | 437 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 434 | IPR016650 | GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER) | |
Cone3ag0031 | 437 | FunFam | Eukaryotic translation initiation factor 3 subunit E | 228 | 433 | - | - | |
Cone3ag0031 | 437 | SUPERFAMILY | TPR-like | 120 | 191 | IPR011990 | GO:0005515(InterPro) | |
Cone3ag0031 | 437 | PIRSF | Transl_init_eIF3e | 1 | 437 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Cone3ag0031 | 437 | SUPERFAMILY | Winged helix DNA-binding domain | 333 | 403 | IPR036390 | - | |
Cone3ag0031 | 437 | Pfam | PCI domain | 306 | 399 | IPR000717 | - | |
Cone3ag0031 | 437 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 137 | IPR019010 | - | |
Cone3ag0031 | 437 | CDD | eIF3E | 4 | 429 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Cone3ag0031 | 437 | ProSiteProfiles | PCI domain profile. | 219 | 403 | IPR000717 | - | |
Cone3ag0031 | 437 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 429 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0625 | Cone-Chr19:5433879 | Cone3ag0031 | Cone-Chr3:197497 | 2.50E-294 | dispersed | |
Cone3ag0031 | Cone-Chr3:197497 | Cone10ag0022 | Cone-Chr10:173508 | 3.27E-30 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag0031 | K03250 | - | mdm:103415044 | 825.083 |