Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0058 | ATGGAGGTGGACGCTGATACCGGGGGGAAACTATCGAAGCATAAGGAAAATCAGGTCTGCCAGATCTGCAGCGACACTATCGGAACCTCCGTGGATTGCCCCTTTGTTGCTTGCGACGTATGTGCGTTTCCCGTTTGCAGGCCCTGCTACGAGTATGAGAGGAAAGATGGGAATCAGTCTTGTCCTCAGTGCAAGACTAAGTACAAATGGCATAAAGGAAGCCCTACTGTAATTGGGGAAGAAGTGGAGGATTCTCGTGTACATGAGAGGAAGAATAAACTACCAGAGCGGACTCTTAGTTGGGACACGAATTATGATAAAGAGGGATCACTTAATCATATTCCTCTGCTTACTACTGGACGTTCTGTTTCGGGAGAGCTTTCTGCTGCATCTCCAGAAAGGCTTTCCATGGCATCTCCTGAAAGTGGGAGCAGGGCTAATTATAGAATGATAGATCCAGCTACTGGATCATCTGGATTTGGGAATGTGGCTTGGAAAGAGAGAATTGATGGTTGGAAGGTAAAGCAGGAGAAGAGTATTCCTCCTATGAGTGTTAGTCATGCCCCTTCTGAAGGTAGGGGAGGTGCAGATTTCGATGCCAGCACTGATGTTCTTATCGACGATTCTCTATTAAATGATGAAGCTCGCCAGCCCTTATCAAGGAAGGTTTCAATTCCATCATCTAGGATTAACCCTTATAGGCTTGTCATAGTTTTACGGCTTATTGTTCTTTGCATCTTCTTGCACTACCGTATAACAAATCCAGTCCCCAATGCCTATGCTTTGTGGTTAATCTCTGTGATCTGTGAGATTTGGTTTGCAATATCATGGATATTGGATCAGTTCCCTAAATGGCTCCCTGTGAATCGTGAGACTTATCTTGATCGGCTAGCTTTACGATATGATCGAGAAGGAGAGCCGTCACAGTTGGCTGCTGTTGACATTTTTGTCAGTACAGTGGATCCTTTGAAGGAACCTCCACTTGTTACTGCGAATACTATCCTATCTATTCTCGCTGTAGATTACCCAGTGGACAAAGTTTCTTGCTATCTCTCAGATGATGGAGCTGCTATGTTGACATTTGAAGCTTTGTCTGAAACATCTGAGTTTGCAAGAAAATGGGTTCCATTTTGCAAGAAATACAGCATTGAGCCACGAGCTCCAGAATGGTACTTTGCACAGAAGATTGATTACTTGAAAGACAAGGTTCAGCCATCCTTTGTAAAAGACCGGAGAGCAATGAAGAGAGACTATGAAGAATTTAAGGTTCGTGTTAATGGGCTTGTCGCAAAGGCACAGAAGATTCCCGATGAAGGATGGGTGATGCAAGATGGTACTCCTTGGCCAGGAAATAACACCAGAGATCATCCCGGAATGATCCAGGTTTTCTTAGGGCATAGCGGAGGACTTGACAGTGAGGGCAATGAGCTTCCACGATTAGTTTACGTTTCTCGAGAAAAGCGTCCTGGCTTCCAACACCACAAGAAGGCTGGTGCTATGAATTCACTTGTCCGCGTATCAGCCGTTCTTACCAACGGGCCCTTCTTGTTGAATCTTGATTGTGATCATTACATAAACAACAGCAAGGCATTGAGGGAAGCCATGTGCTTTCTGATGGACCCTAATCTCGGAAAATCAGTTTGCTATGTTCAGTTTCCACAGAGATTTGACGGTATTGATAGGAACGATCGATATGCTAACCGTAACACTGTTTTCTTTGATATCAATTTAAGAGGATTGGATGGCATCCAAGGTCCAGTTTATGTTGGAACGGGATGTGTTTTCAACCGAACTGCCTTGTATGGCTATGAACCTCCTATCAAGCCTAAGCATAAGGGGCCAGGACTATTATCCTTGTGCTTTGGTGGGTCGAGAAAAAAGAGTTCCAAATCAGGTAGAAAGGAGTCTGATAAGAAAAAATCAAGCAAGCATGTGGACCCCACTGTGCCAATATTCAACTTGGAGGATATTGAAGAAGGAGTTGAGGGTCATGGATTTGATGATGAGAAGTCTCTGCTCATATCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCGGCAGTCTTTGTTGCTTCAACACTAATGGAGAATGGTGGTGTTCCTCATTCTGCCACTCCAGAATCTCTCCTCAAAGAAGCCATCCATGTCATTAGTTGTGGATATGAGGACAAAACTGATTGGGGAAATGAAATTGGATGGATCTATGGTTCCGTTACAGAGGATATTCTAACAGGGTTCAAAATGCATGCCCGTGGTTGGAGATCGATTTACTGCATGCCTTCCCGCCCTGCATTTAAAGGATCCGCTCCTATCAATCTTTCCGATCGTCTAAATCAAGTGCTTAGGTGGGCTTTAGGTTCAGTTGAAATTCTTCTGAGTAGGCATTGCCCCATATGGTATGGTTACAGTGGAAGACTTAAATGGCTAGAGAGATTTGCTTATATCAATACCACCATTTACCCAATTACAGCCATTCCACTTCTTGCCTATTGTACCTTACCCGCAATTTGTCTCCTCACTGGAAAGTTCATTATTCCACAGATTAGTAACATTGCCAGTGTCTGGTTCATATCCCTCTTTCTTTCCATCTTTGCCACGGGTATCTTGGAAATGAGATGGAGTGGTGTGGGAATCGATGAATGGTGGAGAAATGAGCAGTTTTGGGTCATAGGAGGTGTATCGGCCCATCTATTTGCCGTCTTTCAAGGCCTGCTTAAAGTCCTTGCTGGTATTGACACCAATTTCACTGTCACTTCCAAAGCATCAGATGAAGACGGAGATTTTACCGAACTCTATATGTTCAAATGGACAACCCTTTTGATCCCACCCACCACTCTTTTAATCATCAACTTGGTAGGAGTTGTTGCAGGGATTTCTTATGCTGTTAATAGTGGGTATCAATCGTGGGGTCCACTTTTCGGGAAGCTGTTTTTCGCCTTCTGGGTTATTGTTCATCTCTATCCCTTCCTTAAGGGTCTTATGGGTCGACAAAACAGAACACCCACAATTGTTGTTGTCTGGTCTGTTCTTCTTGCTTCAATCTTCTCCTTGTTGTGGGTCCGGATCGATCCTTTTACGACCCGAGTAACTGGGCCCGATGTTGAAGTGTGTGGAATCAACTGCTAA | 3126 | 44.24 | MEVDADTGGKLSKHKENQVCQICSDTIGTSVDCPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPTVIGEEVEDSRVHERKNKLPERTLSWDTNYDKEGSLNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRMIDPATGSSGFGNVAWKERIDGWKVKQEKSIPPMSVSHAPSEGRGGADFDASTDVLIDDSLLNDEARQPLSRKVSIPSSRINPYRLVIVLRLIVLCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTILSILAVDYPVDKVSCYLSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKRDYEEFKVRVNGLVAKAQKIPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNSLVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKGPGLLSLCFGGSRKKSSKSGRKESDKKKSSKHVDPTVPIFNLEDIEEGVEGHGFDDEKSLLISQMSLEKRFGQSAVFVASTLMENGGVPHSATPESLLKEAIHVISCGYEDKTDWGNEIGWIYGSVTEDILTGFKMHARGWRSIYCMPSRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFAYINTTIYPITAIPLLAYCTLPAICLLTGKFIIPQISNIASVWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLIPPTTLLIINLVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTRVTGPDVEVCGINC | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 348716 | 353854 | + | Conep03aG0006000.1 | Cone3ag0058 | 433517 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0058 | 1041 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 91 | IPR013083 | - | |
| Cone3ag0058 | 1041 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 219 | 1010 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
| Cone3ag0058 | 1041 | CDD | mRING-HC-C4C4_CesA | 18 | 67 | - | - | |
| Cone3ag0058 | 1041 | Pfam | Cellulose synthase | 313 | 1035 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
| Cone3ag0058 | 1041 | FunFam | Cellulose synthase | 430 | 604 | - | - | |
| Cone3ag0058 | 1041 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 431 | 604 | IPR029044 | - | |
| Cone3ag0058 | 1041 | SUPERFAMILY | RING/U-box | 6 | 85 | - | - | |
| Cone3ag0058 | 1041 | Pfam | Zinc-binding RING-finger | 12 | 84 | IPR027934 | - | |
| Cone3ag0058 | 1041 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 327 | 852 | IPR029044 | - | |
| Cone3ag0058 | 1041 | MobiDBLite | consensus disorder prediction | 628 | 645 | - | - | |
| Cone3ag0058 | 1041 | MobiDBLite | consensus disorder prediction | 621 | 646 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0346 | Cone-Chr17:1624001 | Cone3ag0058 | Cone-Chr3:348716 | 0 | dispersed | |
| Cone3ag0058 | Cone-Chr3:348716 | Cone4ag1800 | Cone-Chr4:13064719 | 0 | dispersed | |
| Cone10ag0044 | Cone-Chr10:281158 | Cone3ag0058 | Cone-Chr3:348716 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0058 | K10999 | - | csv:101211779 | 1950.64 |