Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0060 ATGGGAACCCCAGAATTTCCCGATCTAGGAAAGCATTGTGCTGTTCAAGATTGCAAGATCATCGATTTCTTGCCCTTCACTTGCGATCGCTGCCGCCAGGTTTTTTGTTTGGAGCATCGAAGTTACATTGAACACAGTTGTCCAAAACCCAACAAAGATGATGTAACAGTTGTCATCTGTCCGCTTTGTGCCAAAGGAGTCCGTCTTAATCCAGATGAAGACCCAAATATCACTTGGGAAACCCATGTGAACACAGAATGTGACCCGACAAATTATGAGAAGGTCAACCACAAGAAAAAGTGCCCCATCCATGGCTGCCGAGAAGTCCTCACTTTCTCAAACACAATAAAATGCCGTGAATGCTTAGTGGACCATTGTTTGAAGCACCGTTTCGTGACCGACCATAAATGCACAGGACCCAGAAAACCCGAATCCAGTTTTCCATTTCTGGGCCTTCTGAGTCTGAGTAGAAATGAAGAACCCAAGCACAAGCAGAAGCCCAAGCCTAAGCCCAATCAACCTGCAACCACCACCTCATGGGCTACAAGCTTTTTCAGTGGCGCCTCAAATCTACGAGCCTCGGCTGAAGCAGGGGTAGCCAAATTGAGTAATGAAATCGGCCAAGCTTGGTTGGGGCAAAGTAGTAGTAGTAGTAGTAGTAGTAGTGGGAGTGGAAATAGAAATGGGGTTCTTACGGAGGAGTGCCCACAATGTGGTTCAAAGTTTTCTTCGGTTTCGAGTTTGGTAGATCATGTGGAGAAAGTCCATGAAAGGAGGATTGGAAAGCGTGCAAGCACAAAGAAGGCGGTGACAATTGATGTGTGTCCGAAGTGTAGTAAGGGATTTCGGGATCCGGTTGCCCTTGTGGAACATGTTGAGAGGGACCATGGAGGTACTTCAAAAGCTTAG 909 46.75 MGTPEFPDLGKHCAVQDCKIIDFLPFTCDRCRQVFCLEHRSYIEHSCPKPNKDDVTVVICPLCAKGVRLNPDEDPNITWETHVNTECDPTNYEKVNHKKKCPIHGCREVLTFSNTIKCRECLVDHCLKHRFVTDHKCTGPRKPESSFPFLGLLSLSRNEEPKHKQKPKPKPNQPATTTSWATSFFSGASNLRASAEAGVAKLSNEIGQAWLGQSSSSSSSSSGSGNRNGVLTEECPQCGSKFSSVSSLVDHVEKVHERRIGKRASTKKAVTIDVCPKCSKGFRDPVALVEHVERDHGGTSKA 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 357139 359389 + Conep03aG0006200.1 Cone3ag0060 433519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0060 302 ProSitePatterns Zinc finger C2H2 type domain signature. 235 256 IPR013087 -
Cone3ag0060 302 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
Cone3ag0060 302 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Cone3ag0060 302 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Cone3ag0060 302 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 269 - GO:0005737(PANTHER)
Cone3ag0060 302 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
Cone3ag0060 302 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
Cone3ag0060 302 MobiDBLite consensus disorder prediction 159 179 - -
Cone3ag0060 302 Pfam Zinc finger, C2H2 type 274 296 IPR013087 -
Cone3ag0060 302 Pfam C2H2-type zinc finger 234 256 - -
Cone3ag0060 302 Gene3D - 86 175 IPR035896 -
Cone3ag0060 302 Gene3D - 2 60 IPR035896 -
Cone3ag0060 302 SUPERFAMILY beta-beta-alpha zinc fingers 234 292 IPR036236 -
Cone3ag0060 302 Gene3D Classic Zinc Finger 209 299 - -
Cone3ag0060 302 SMART c2h2final6 233 256 IPR013087 -
Cone3ag0060 302 SMART c2h2final6 273 296 IPR013087 -
Cone3ag0060 302 ProSitePatterns Zinc finger C2H2 type domain signature. 275 296 IPR013087 -
Cone3ag0060 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 256 IPR013087 -
Cone3ag0060 302 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
Cone3ag0060 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 301 IPR013087 -
Cone3ag0060 302 MobiDBLite consensus disorder prediction 211 230 - -
Cone3ag0060 302 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270(InterPro)
Cone3ag0060 302 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0521 Cone-Chr19:4281234 Cone3ag0060 Cone-Chr3:357139 1.84E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45750 PF13499 EF-hand_7 6.10E-10 CL0220 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0060 - - - 0.0