Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag0060 | ATGGGAACCCCAGAATTTCCCGATCTAGGAAAGCATTGTGCTGTTCAAGATTGCAAGATCATCGATTTCTTGCCCTTCACTTGCGATCGCTGCCGCCAGGTTTTTTGTTTGGAGCATCGAAGTTACATTGAACACAGTTGTCCAAAACCCAACAAAGATGATGTAACAGTTGTCATCTGTCCGCTTTGTGCCAAAGGAGTCCGTCTTAATCCAGATGAAGACCCAAATATCACTTGGGAAACCCATGTGAACACAGAATGTGACCCGACAAATTATGAGAAGGTCAACCACAAGAAAAAGTGCCCCATCCATGGCTGCCGAGAAGTCCTCACTTTCTCAAACACAATAAAATGCCGTGAATGCTTAGTGGACCATTGTTTGAAGCACCGTTTCGTGACCGACCATAAATGCACAGGACCCAGAAAACCCGAATCCAGTTTTCCATTTCTGGGCCTTCTGAGTCTGAGTAGAAATGAAGAACCCAAGCACAAGCAGAAGCCCAAGCCTAAGCCCAATCAACCTGCAACCACCACCTCATGGGCTACAAGCTTTTTCAGTGGCGCCTCAAATCTACGAGCCTCGGCTGAAGCAGGGGTAGCCAAATTGAGTAATGAAATCGGCCAAGCTTGGTTGGGGCAAAGTAGTAGTAGTAGTAGTAGTAGTAGTGGGAGTGGAAATAGAAATGGGGTTCTTACGGAGGAGTGCCCACAATGTGGTTCAAAGTTTTCTTCGGTTTCGAGTTTGGTAGATCATGTGGAGAAAGTCCATGAAAGGAGGATTGGAAAGCGTGCAAGCACAAAGAAGGCGGTGACAATTGATGTGTGTCCGAAGTGTAGTAAGGGATTTCGGGATCCGGTTGCCCTTGTGGAACATGTTGAGAGGGACCATGGAGGTACTTCAAAAGCTTAG | 909 | 46.75 | MGTPEFPDLGKHCAVQDCKIIDFLPFTCDRCRQVFCLEHRSYIEHSCPKPNKDDVTVVICPLCAKGVRLNPDEDPNITWETHVNTECDPTNYEKVNHKKKCPIHGCREVLTFSNTIKCRECLVDHCLKHRFVTDHKCTGPRKPESSFPFLGLLSLSRNEEPKHKQKPKPKPNQPATTTSWATSFFSGASNLRASAEAGVAKLSNEIGQAWLGQSSSSSSSSSGSGNRNGVLTEECPQCGSKFSSVSSLVDHVEKVHERRIGKRASTKKAVTIDVCPKCSKGFRDPVALVEHVERDHGGTSKA | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 357139 | 359389 | + | Conep03aG0006200.1 | Cone3ag0060 | 433519 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag0060 | 302 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 235 | 256 | IPR013087 | - | |
Cone3ag0060 | 302 | ProSiteProfiles | Zinc finger AN1-type profile. | 7 | 55 | IPR000058 | GO:0008270(InterPro) | |
Cone3ag0060 | 302 | SUPERFAMILY | AN1-like Zinc finger | 6 | 51 | IPR035896 | - | |
Cone3ag0060 | 302 | SUPERFAMILY | AN1-like Zinc finger | 93 | 144 | IPR035896 | - | |
Cone3ag0060 | 302 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 5 | 269 | - | GO:0005737(PANTHER) | |
Cone3ag0060 | 302 | SMART | AN1_Zf_4 | 101 | 142 | IPR000058 | GO:0008270(InterPro) | |
Cone3ag0060 | 302 | SMART | AN1_Zf_4 | 13 | 52 | IPR000058 | GO:0008270(InterPro) | |
Cone3ag0060 | 302 | MobiDBLite | consensus disorder prediction | 159 | 179 | - | - | |
Cone3ag0060 | 302 | Pfam | Zinc finger, C2H2 type | 274 | 296 | IPR013087 | - | |
Cone3ag0060 | 302 | Pfam | C2H2-type zinc finger | 234 | 256 | - | - | |
Cone3ag0060 | 302 | Gene3D | - | 86 | 175 | IPR035896 | - | |
Cone3ag0060 | 302 | Gene3D | - | 2 | 60 | IPR035896 | - | |
Cone3ag0060 | 302 | SUPERFAMILY | beta-beta-alpha zinc fingers | 234 | 292 | IPR036236 | - | |
Cone3ag0060 | 302 | Gene3D | Classic Zinc Finger | 209 | 299 | - | - | |
Cone3ag0060 | 302 | SMART | c2h2final6 | 233 | 256 | IPR013087 | - | |
Cone3ag0060 | 302 | SMART | c2h2final6 | 273 | 296 | IPR013087 | - | |
Cone3ag0060 | 302 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 275 | 296 | IPR013087 | - | |
Cone3ag0060 | 302 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 233 | 256 | IPR013087 | - | |
Cone3ag0060 | 302 | ProSiteProfiles | Zinc finger AN1-type profile. | 95 | 145 | IPR000058 | GO:0008270(InterPro) | |
Cone3ag0060 | 302 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 273 | 301 | IPR013087 | - | |
Cone3ag0060 | 302 | MobiDBLite | consensus disorder prediction | 211 | 230 | - | - | |
Cone3ag0060 | 302 | Pfam | AN1-like Zinc finger | 13 | 51 | IPR000058 | GO:0008270(InterPro) | |
Cone3ag0060 | 302 | Pfam | AN1-like Zinc finger | 101 | 140 | IPR000058 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0521 | Cone-Chr19:4281234 | Cone3ag0060 | Cone-Chr3:357139 | 1.84E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45750 | PF13499 | EF-hand_7 | 6.10E-10 | CL0220 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag0060 | - | - | - | 0.0 |