Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0061 ATGGGGTCTTTTTGCTTCTACATTCTTCTTATTGAGCTCATTTTGATGATGGACTCGCTGATTTTAAATGCTCAGCTTCATGATCAAACTACTCTGTCCGCCATTAACGAAGAGCTTGTAGTTCCAGGGTGGGGCCTCACTACCTCTGACTACTGTTCGTGGCCTGGAATTCACTGTAACTTGAACCGTTCAAGGGTCGAAAAACTCGACCTCTCGCGGAAAGAGCTAAGAGGTAATATTACTTTAATTTCCGAGCTGACAGCTTTGAAATGGCTTGACCTTTCCAATAACGATTTCTATGGGGCAATTCCTTCAGCTTTTGGCAACTTATCCGAGCTCCAGTTCATTGATCTGTCTGTTAATAAGTTTGAAGGCTCAATCCCACTTGAATTGGGTGGTCTTAAAAACCTTAGATCTTTGAACCTTTCCAATAATTTTCTGTTTGGGGAAATACCTAACGAACTTCAAGGCTTGGTCAATTTGAAGGACTTTCAAATTTCAAGTAATAGATTGAACGGTTCAATTCCAGCTTGGGTTGGGAATTTGACTAATCTAAGAGTTTTTACAGCTTATGAGAATGAATTTGGCGGTGAAATTCCGGATAATTTAGGCTTGGTTTCTGAGCTTAAGATTTTGAATCTCCATTCTAATGAACTAGAAGGTGAGATACCTAAGAGCATTTTCGCGTTAGGCAAGCTTGAAGTTTTGATTCTGACCCAGAACAGATTGACCGGAAACCTTCCTGAAGAAATCGGAAACTGCAAAGGCCTTTCAAATGTTCGAATTGGGAACAATAATCTTATTGGTAACATTCCGAATTCAATAGGAAATGTTAGTAGCCTTACTTATTTTGAAGTGGACAAGAACAATTTTTCAGGAAAAATAGTCTCTCAATTTGCACATTGTTTGAATCTCACCCTTTTGAATTTAGCCTCAAATGGGTTTACCGGAAAAATCCCAATTGAGCTTGGAGAGTTACTGAATTTGCAGGAGCTGATTCTTTCGAGCAATGGCCTGTTTGGGGATATTCCAAGATCGGTTCTTGAATGTACGAATCTTAACAAACTTGATCTAAGTAATAATAAATTCAATGGTAGTATTCCAATTGAAATATGTAACCTGCCTAGACTGCAATACTTGCTATTGGATCAGAATTCGATTGAAGGAGAAATCCCAAATGAGATTGGAAAATGCGTGAAGCTTCTACAACTTCAACTGGGTAGCAACTATTTAACCGGAACTATTCCTTCTGAGATTGGTCATATCAAGAATTTACAAATAGCTTTGAACTTGAGCTTCAATCATTTACATGGACCATTGCCTCCTGATTTGGGTAAACTTGACAAGCTGGTTTCTTTAGATGTTGCTAATAATCATCTTTCGGGTAATATACCATCTGAGCTAAAGGGCATGTTGAGCTTGATAGAGGTTAATTTCTCTAACAATCTCTTTACGGGTCCCATTCCGGCTTTTGTCCCGTTCCAAAAGAGCTCAAATTTGAGCTTTTTAGGAAACAAAGGACTCTGTGGAGGGCCGTTAAGCATTTCTTGTGGAAATTCTAATGGGCCTTATAATTCCCATCACAAGGTTTCTTATAGGATCATACTAGCTGTCATCGGGTCCGGTTTGGCCGTTTTTGTATCGGTTACTATTATTGTCGTGCTTTTTATGATGCGAGAAAGGCAAGAGAAAGAAGCCAAATCTTCCGGGATTGTAGAAGATGAAGCGGCCAATAGTTCCCGGCCCACAATTATAGCCGGAAATGTATTTGTCGAAAATCTTAAACAGGCAATAGATCTTGATGCTGTTGTTAAGGCCTCTTTGAAGGATTCAAACAAGCTCAATTTCGGAACTTTTAGTACAGTTTATAAAGCCGTCATGCCTTCTGGAATGATTATATCAGTGAAGAGATTGAAGTCTATGGACCGGACTATTGTTCATCATCAAAGCAAGATGATAAGAGAGCTAGAAAGACTGAGCATGTTATGTCACGAGAATCTTGTTCGGCCCATTGGGTTTGTTATTTATGAGGATGTTGCTTTGTTGCTTCATGATTATCTGCCCAATGGGACTTTAGCCCAGCTTCTTCACGAATCTACGAAGAAGCCTGAATATGAGCCTGATTGGCCCACCCGGCTTAACATTGCCGTTGGAGTCGCAGAAGGGTTGGCTTTCCTTCATCATGTGGCTGTGATTCATCTAGACATGTCATCTGCAAATGTTCTTCTAGATTCTAACTTCAAGCCGTTAGTTGGAGAAATTGAGATATCAAAGCTTTTGGATCCATCCAAAGGAACGGCAAGTATAAGTGCAGTTGCTGGTTCGTTCGGCTATATTCCCCCAGAATATGCCTATACAATGCAAGTGACGGCACCTGGAAATGTGTATAGCTATGGGGTGGTCTTGCTAGAGATTCTTACAACAAGATTACCAGTTGAAGAGGAGTTTGGAGAAGGGGTGGATTTGGTGAAGTGGGTCCATACTGCTTCGGTGAGAGGGGAAACACCAGAGCAGATCCTTGATGCTCGGCTTAGCACAGTTTCTTTCGGTTGGAGGAGAGAGATGCTTGCGGTTTTGAAGGTTGCATTGCTTTGCACTGATAATATTCCGGCCAAACGGCCAAAAATGAGGAAGGTTGTGGAAATGCTTCAAGAAATCAAGCAAAGCTGA 2670 40.75 MGSFCFYILLIELILMMDSLILNAQLHDQTTLSAINEELVVPGWGLTTSDYCSWPGIHCNLNRSRVEKLDLSRKELRGNITLISELTALKWLDLSNNDFYGAIPSAFGNLSELQFIDLSVNKFEGSIPLELGGLKNLRSLNLSNNFLFGEIPNELQGLVNLKDFQISSNRLNGSIPAWVGNLTNLRVFTAYENEFGGEIPDNLGLVSELKILNLHSNELEGEIPKSIFALGKLEVLILTQNRLTGNLPEEIGNCKGLSNVRIGNNNLIGNIPNSIGNVSSLTYFEVDKNNFSGKIVSQFAHCLNLTLLNLASNGFTGKIPIELGELLNLQELILSSNGLFGDIPRSVLECTNLNKLDLSNNKFNGSIPIEICNLPRLQYLLLDQNSIEGEIPNEIGKCVKLLQLQLGSNYLTGTIPSEIGHIKNLQIALNLSFNHLHGPLPPDLGKLDKLVSLDVANNHLSGNIPSELKGMLSLIEVNFSNNLFTGPIPAFVPFQKSSNLSFLGNKGLCGGPLSISCGNSNGPYNSHHKVSYRIILAVIGSGLAVFVSVTIIVVLFMMRERQEKEAKSSGIVEDEAANSSRPTIIAGNVFVENLKQAIDLDAVVKASLKDSNKLNFGTFSTVYKAVMPSGMIISVKRLKSMDRTIVHHQSKMIRELERLSMLCHENLVRPIGFVIYEDVALLLHDYLPNGTLAQLLHESTKKPEYEPDWPTRLNIAVGVAEGLAFLHHVAVIHLDMSSANVLLDSNFKPLVGEIEISKLLDPSKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVEEEFGEGVDLVKWVHTASVRGETPEQILDARLSTVSFGWRREMLAVLKVALLCTDNIPAKRPKMRKVVEMLQEIKQS 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 361209 365218 - Conep03aG0006300.1 Cone3ag0061 433520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0061 889 Pfam Protein kinase domain 611 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0061 889 CDD STKc_IRAK 617 886 - -
Cone3ag0061 889 Pfam Leucine Rich Repeat 429 447 IPR001611 GO:0005515(InterPro)
Cone3ag0061 889 Pfam Leucine Rich Repeat 209 228 IPR001611 GO:0005515(InterPro)
Cone3ag0061 889 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cone3ag0061 889 Pfam Leucine Rich Repeat 232 254 IPR001611 GO:0005515(InterPro)
Cone3ag0061 889 Pfam Leucine Rich Repeat 304 326 IPR001611 GO:0005515(InterPro)
Cone3ag0061 889 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 60 231 - -
Cone3ag0061 889 SUPERFAMILY Protein kinase-like (PK-like) 605 884 IPR011009 -
Cone3ag0061 889 Gene3D Phosphorylase Kinase; domain 1 573 686 - -
Cone3ag0061 889 ProSiteProfiles Protein kinase domain profile. 608 889 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0061 889 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 67 888 IPR050647 -
Cone3ag0061 889 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515(InterPro)
Cone3ag0061 889 Pfam Leucine rich repeat 88 145 IPR001611 GO:0005515(InterPro)
Cone3ag0061 889 Gene3D Transferase(Phosphotransferase) domain 1 687 889 - -
Cone3ag0061 889 Gene3D Ribonuclease Inhibitor 231 521 IPR032675 -
Cone3ag0061 889 SUPERFAMILY L domain-like 281 513 - -
Cone3ag0061 889 ProSitePatterns Tyrosine protein kinases specific active-site signature. 731 743 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0061 889 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 687 889 - -
Cone3ag0061 889 SMART LRR_typ_2 447 470 IPR003591 -
Cone3ag0061 889 SMART LRR_typ_2 86 109 IPR003591 -
Cone3ag0061 889 SMART LRR_typ_2 230 254 IPR003591 -
Cone3ag0061 889 SMART LRR_typ_2 374 398 IPR003591 -
Cone3ag0061 889 SMART LRR_typ_2 158 182 IPR003591 -
Cone3ag0061 889 SMART LRR_typ_2 134 157 IPR003591 -
Cone3ag0061 889 SMART LRR_typ_2 326 350 IPR003591 -
Cone3ag0061 889 SUPERFAMILY L domain-like 35 367 - -
Cone3ag0061 889 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 232 521 - -
Cone3ag0061 889 Gene3D Ribonuclease Inhibitor 22 170 IPR032675 -
Cone3ag0061 889 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 578 686 - -
Cone3ag0061 889 Gene3D Ribonuclease Inhibitor 171 230 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0061 Cone-Chr3:361209 Cone14ag0207 Cone-Chr14:950468 2.87E-65 dispersed
Cone4ag1223 Cone-Chr4:10215056 Cone3ag0061 Cone-Chr3:361209 1.24E-61 transposed
Cone10ag0048 Cone-Chr10:294578 Cone3ag0061 Cone-Chr3:361209 3.41e-318 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82642 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0061 - - - 0.0