Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0063 ATGAGTCACTCGACTAGTGAAACTGATGATGCATTTTCCAATTTACTCGAATTTGCTGCTAATAACGACCTTGAGGGCTTCAAACGAGCAATTTCCCGCAATCCTTCTGGTATTAATGAGATTGGTCTTTGGTATAGCCGTCACAAGGGCTCAAAGCAGATGGTTTATAAGCATAGAACACCATTAATGGTCGCATCTACTTATGGCAGTATTGATGTTATGAAGCTGATACTTTCTCAAACCGGTGTTGATGTAAATCGTAGAGTTGGTCTTGACAATTGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGGCTGCGAATGCAGTTGAGGTTGTGAAACTGCTTTTAGAATCCGGTGCTGATCCAAGTTTAGCGGATGCTAATGGTCACTCTCCTGTTGACAACATTGTTGTTCCTCCAAGGTTGAAAGAGGTCAAATTGACCCTAGTAGAACTCCTAACAATAGATGGTCCTGTTAACGAGAAAAACATGGGCTTTTCAGATTCTCCTCCTATACCATCTTCTCCTGATTCTTTGGATTTTGTTTATTCACCAACAAGATCAAAATACAATGATTTCCCCACCTATTCTTCATTACAGAAGAAGGAATACCCAATTGATCCATCTCTACCTGATGTTAAGAACAACATGTACTCAACCGACGAATTTAGAATGTATTCATTCAAAGTGAGACCTTGTTCTAGGGCCTATTCCCATGATTGGACCGAATGCCCATTTGTCCATCCTGGTGAAAATGCACGGAGAAGGGATCCTAGGAAGTTCCATTACAGTTGTTTTCCTTGTCTGGATTTCCGGAGAGGTACTTGTAGGCAAGGAGATATGTGTGAATATGCCCATGGAGTTTTTGAAAGTTGGCTACACCCAGCTCAGTACAGAACCCGTCTTTGCAAGGATGGCCGTAGTTGTTCTAGGAGGGTCTGCTTTTTCGCTCATACTCCAGAGGAGCTTCGCCCGTTATATGTCTCTACTGACTCTTCTGCACTTTCTCCTAGTTCGGGTTCTTCTGGAATGGCTACTATGGATTATGCAACTACTATGAACCATATCTTGCCTAATTCTCCATCTTCATTCACTCCTCCCATGTCTCTGTCTGCAAATAATGGCATGTCACAACACTCTTCAATAGCTTGGCCTCAACAGAATAATGTTCCATCTTTGCATCTTCCTGGAAGCACGCTTCAGTGGAGCCGTTTAAGATCTTCCCTAAATGCGAGAGACATTCCGTTTGAAGATTTTGATTTGCTCAAGGATTTTGATGCCAAACAGCAACAGCTTCTAAATGAATTCTCTTGTTTGTCTCATCCTTCTTTGCTTTCTAATTCTTTGAACCGTTCTGGCCGGTTTAAAACCACGACCCCCTCGAATATTGACGATCACTTTTCTGGTGAGAGTTCTTCTCCTAGATACTCTGATCAGGCATTGGCTTCTGCTGTGTTATCTCCAACCCATAAATCAGCCGTTCTAAATCAATTTCGGCAGCAACAGAGTATGCTGTCTCCAATCAACACAAATTTCTCTCCAAAAAATGTTGACCACCCTTTATTACAGGCTTCTTTTGGGATTCAATCACCAGGAAGGATGTCTCCAAGAAATGGGGAACCTATTTCACCGATCAGTTCAAGGATGTCTATGCTAGCTCAGAGGGAAAAGCTGCAACAATTTCGAAGCCTTAGTTCGAGGGAGCTTGGTGGCTCTTCTTTTTCCATGTTTGGATCTCCTCCTATACATGATTCTTGGTCTAAATGTGGTTCTTCGAACGGTGATCCGGATTGGGCCGTAAACTCGTTAGATGGCTTGGGCAGGCTACGTAGATCCTCTTCATTTGAGCTTGGGAACAATGGGGAAGAGCCCGATTTATCATGGGTTCAGTCACTTGTTAAGGATTTACCAACCGAGATGAAAGAAGAGGTGGCTCCACCACCTGTCTCGGTCTATCCAAGTACTGTTTCCTCTGGGGGGTTTTTAGATGCGAAATCCGAAATGGAATCAAGTGATCAGGCTGTGTTGGGAGCATGGCTTGAGCAAATGCAGCTTGATCAGCTTGTAGTTAAAGCACAATCGAGACCTTCAGATTTTAGTGGTGTGCCCAGTGCTTCGAAGGGAAATGAGAAGAAAAGATGA 2142 43.46 MSHSTSETDDAFSNLLEFAANNDLEGFKRAISRNPSGINEIGLWYSRHKGSKQMVYKHRTPLMVASTYGSIDVMKLILSQTGVDVNRRVGLDNCTALHCAASGGAANAVEVVKLLLESGADPSLADANGHSPVDNIVVPPRLKEVKLTLVELLTIDGPVNEKNMGFSDSPPIPSSPDSLDFVYSPTRSKYNDFPTYSSLQKKEYPIDPSLPDVKNNMYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCFPCLDFRRGTCRQGDMCEYAHGVFESWLHPAQYRTRLCKDGRSCSRRVCFFAHTPEELRPLYVSTDSSALSPSSGSSGMATMDYATTMNHILPNSPSSFTPPMSLSANNGMSQHSSIAWPQQNNVPSLHLPGSTLQWSRLRSSLNARDIPFEDFDLLKDFDAKQQQLLNEFSCLSHPSLLSNSLNRSGRFKTTTPSNIDDHFSGESSSPRYSDQALASAVLSPTHKSAVLNQFRQQQSMLSPINTNFSPKNVDHPLLQASFGIQSPGRMSPRNGEPISPISSRMSMLAQREKLQQFRSLSSRELGGSSFSMFGSPPIHDSWSKCGSSNGDPDWAVNSLDGLGRLRRSSSFELGNNGEEPDLSWVQSLVKDLPTEMKEEVAPPPVSVYPSTVSSGGFLDAKSEMESSDQAVLGAWLEQMQLDQLVVKAQSRPSDFSGVPSASKGNEKKR 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 379515 381656 + Conep03aG0006500.1 Cone3ag0063 433522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0063 713 MobiDBLite consensus disorder prediction 693 713 - -
Cone3ag0063 713 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Cone3ag0063 713 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Cone3ag0063 713 Gene3D - 7 145 IPR036770 -
Cone3ag0063 713 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cone3ag0063 713 SUPERFAMILY Ankyrin repeat 13 163 IPR036770 -
Cone3ag0063 713 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Cone3ag0063 713 Gene3D - 265 325 - -
Cone3ag0063 713 SMART c3hfinal6 262 288 IPR000571 GO:0046872(InterPro)
Cone3ag0063 713 SMART c3hfinal6 297 320 IPR000571 GO:0046872(InterPro)
Cone3ag0063 713 MobiDBLite consensus disorder prediction 449 474 - -
Cone3ag0063 713 PANTHER UNKEMPT FAMILY MEMBER 42 635 IPR045234 -
Cone3ag0063 713 ProSiteProfiles Zinc finger C3H1-type profile. 267 289 IPR000571 GO:0046872(InterPro)
Cone3ag0063 713 Pfam Ankyrin repeats (3 copies) 49 125 IPR002110 GO:0005515(InterPro)
Cone3ag0063 713 FunFam Zinc finger CCCH domain-containing protein 66 220 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0567 Cone-Chr1:5761316 Cone3ag0063 Cone-Chr3:379515 5.13E-129 dispersed
Cone1ag1210 Cone-Chr1:55944624 Cone3ag0063 Cone-Chr3:379515 6.70E-123 dispersed
Cone3ag0063 Cone-Chr3:379515 Cone5ag1074 Cone-Chr5:4765337 3.60E-138 dispersed
Cone10ag0050 Cone-Chr10:310015 Cone3ag0063 Cone-Chr3:379515 0 wgd
Cone13ag0563 Cone-Chr13:5816285 Cone3ag0063 Cone-Chr3:379515 0 wgd
Cone19ag0515 Cone-Chr19:4239380 Cone3ag0063 Cone-Chr3:379515 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45751 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0063 - - - 0.0