Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0068 ATGGCTGACTATCCCTACTCATCAAATTTCTACACAAGTCTTTTCAAATTCAACCCTATCCAGTACCAATACTACCCACCTCAACCAAACCCACCTTTAGCACCACCACAACCACTTCCTCCGCCCTACACGGAGGCCCACAACTTCTTCTTCAACCCCCATCACGCCCACCACCAAGACCAGTACTCTTTTAGTAACAGTAACTCCCATCAATTTACTCCACCTCCTTCTCCTCCTCTTAGGCAAGCCCTCCCTCTTCTCAGACTCAGCCCTACCAAACAAGAAAAAGAAGAACATGATCATAGCCATAACCAGGTAGAACAAGATCAAGAGGATGAAGATGAAGAGGAGGAGGAGGAGGATGCGGCCAATTTGACTGTGGCACTGCACATAGGGTTGCCAAACCCTAGCGCCGCTGAACTGGCATCTGTGCTGTCATATGCTTCAGCTTCTTCTTCTGATCATCATAACCATAATCATGATCATCAGATCAGCAGTAATAACAAAGATCATACAAATGATGATGATTATGATGATGATTCTGGAGGGTATAATCACATGAGAAGGCTGAACAAGGGTCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGCCCCACTCAATTTTCTTGCCCTGTTTGCTGCAAGACCTTCAATCGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCAGAATCACTAAGAGGAACACAACCAACCGGAATGCTGAGGCTTCCGTGCTACTGTTGCTCGCCGGGATGTAGGAACAACATAGATCATCCGAGAGCAAAGCCCCTTAAAGATTTTAGGACACTTCAAACACATTACAAGAGAAAGCATGGCATCAAGCCCTTCATGTGTCGGAAATGTGGCAAGGCATTTGCAGTGAGGGGCGATTGGAGAACTCATGAGAAGAATTGTGGCAAACTCTGGTTCTGTATTTGTGGGACTGATTTTAAGCACAAGAGATCTCTTAAGGACCATATCAAAGCTTTTGGGAATGGGCATGCAGCTTATGGAATCGATAATCGTGGATTCGATCAAGAAGAAGACGAGCCGGCTTCGGAAGTCGAACAAGACAATGAATCCATGCAATTGTGA 1128 45.48 MADYPYSSNFYTSLFKFNPIQYQYYPPQPNPPLAPPQPLPPPYTEAHNFFFNPHHAHHQDQYSFSNSNSHQFTPPPSPPLRQALPLLRLSPTKQEKEEHDHSHNQVEQDQEDEDEEEEEEDAANLTVALHIGLPNPSAAELASVLSYASASSSDHHNHNHDHQISSNNKDHTNDDDYDDDSGGYNHMRRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWFCICGTDFKHKRSLKDHIKAFGNGHAAYGIDNRGFDQEEDEPASEVEQDNESMQL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 407244 409600 + Conep03aG0007000.1 Cone3ag0068 433527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0068 375 MobiDBLite consensus disorder prediction 151 184 - -
Cone3ag0068 375 MobiDBLite consensus disorder prediction 154 184 - -
Cone3ag0068 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 314 IPR013087 -
Cone3ag0068 375 MobiDBLite consensus disorder prediction 352 375 - -
Cone3ag0068 375 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 293 317 - -
Cone3ag0068 375 PANTHER ZINC FINGER PROTEIN WIP2 51 372 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cone3ag0068 375 Gene3D Classic Zinc Finger 271 348 - -
Cone3ag0068 375 SMART c2h2final6 294 314 IPR013087 -
Cone3ag0068 375 SMART c2h2final6 210 232 IPR013087 -
Cone3ag0068 375 MobiDBLite consensus disorder prediction 91 108 - -
Cone3ag0068 375 FunFam Zinc finger protein WIP2 263 345 - -
Cone3ag0068 375 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Cone3ag0068 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
Cone3ag0068 375 Gene3D Classic Zinc Finger 209 232 - -
Cone3ag0068 375 MobiDBLite consensus disorder prediction 26 43 - -
Cone3ag0068 375 SUPERFAMILY beta-beta-alpha zinc fingers 276 314 IPR036236 -
Cone3ag0068 375 MobiDBLite consensus disorder prediction 26 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0068 Cone-Chr3:407244 Cone6ag0465 Cone-Chr6:2295739 9.73E-108 dispersed
Cone10ag0055 Cone-Chr10:333471 Cone3ag0068 Cone-Chr3:407244 2.07E-184 wgd
Cone19ag0509 Cone-Chr19:4187739 Cone3ag0068 Cone-Chr3:407244 1.46E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45752 PF07992 Pyr_redox_2 2.30E-46 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0068 - - - 0.0