Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0073 ATGGCTGCCAAGCCCTCCATTATTACTCGTCCATTCTTCTTCACTCTTACAACCCTTTTCACCGTCTTCGTTCTCACTTCATCTTCATCCGAACCAGACATTCTTCTCACCTTCAAATCCTCCATTAAAGACCCAAACAACTTCCTCTCAACCTGGTCCAACATCTCCACTGCCAACTATTGTAACTGGACCGGCATCACTTGTACCTCCGCCGGCGGCGGAGCTCCGCCCTCCATTACCTCCCTCAACCTCCAAAGCTCAAACCTTTCCGGCGAAATCTCATCCTCAATATGCCAACTTCCCAATTTAGCCCACCTCAATCTAGCCGACAACCTCTTCAACCAACCAATCCCTCTTCACCTCTCACAATGCACATCTTTAGAAACCCTGAATCTTAGCAACAATCTCATCTGGGGAACAATCCCAGATCAAATATCCCAATTTGGGTCCTTGAAAGTTCTTGACTTCAGCATGAACCATGTTGAAGGAAAAATCCCAGAAGCCATTAGTGAGTTGAAGATGCTTCAAGTTCTCAAATTGGGAAGCAATTTGCTTTCAGGTAATTTACCCATCAACTTGTTTAAGAATCTGACTGAACTAAATGTTCTTGATTTGTCACAAAATGTGTACTTAGTGAGTGAGATTCCTAGTAATATAGGGAATCTTGAGAAGCTAGAGACATTGTTTCTACAAGGTTGTGGCTTTCATGGTAAGATTCCAGCGACTTTCTTGGGTTTGAAAAGCTTGAGAATATTAGATCTTTCATTGAATGATCTAGGTGGGATTTTCCCCCAAAAAACTCTTGATTCTTCTCTCAAGAACTTGGTCTCTTTTGATGTTTCACAAAACAAGCTTTTCGGGTCATTTCCGGATGGAATTTGTAATGGAAGGAAAGGGCTTATAAATCTAAATCTGCATACCAATTTTTTCAATGGTTCTATACCCAATTCCTCCATTAAAGATTGCTTCAATCTTGAGAGGTTTCAAGTTCAAAACAATAAGTTTTATGGTGATTTTCCGAGTGGGTTATGGTCTTTACCCAAAATCAAGCTTATCAGGGCAGAAAACAATCGATTTTCTGGAGAAATACCTGATTCAATATCAATGGCTGTTCAGCTGGAGCAAGTTCAAATAGATAACAATACCTTTAGCGGCAAATTACCCTTTGGCCTAGGATCAATCCGTACCTTATACAGATTCTCTGCTTCACTTAACAACTTATATGGTCAATTGCCTCCAAATTTTTGCGACTCTCCATTGATGAGCATCATCAACTTCTCCCACAATTCTCTTTCTGGCCAAATCCCTGAGCCCAAAAAGTGTAAAAAGCTCGTATCTTTAGCCTTGGCCAATAACAATTTGACTGGACAAATCCCATCATCTCTTTCCTATTTACCGGTTTTAACTTACCTTGACCTTTCTGATAATAACCTTACTGGACCAATCCCTCAAGAACTTCAAAACTTAAAGCTCGCCCTCTTCAATGTTTCCTTTAATCAATTATCTGGTAGAGTACCTTACTCTCTAATCTCTGGTCTTCCCGCCTCATTTCTTCAAGGAAATCCCGATCTTTGTGGACAAGGATTAGGAAATTCTTGTTCAAATGACCCGACTAAAAACCACCATCATGATGCTAATCTTACCATATTGATCTGTGCTATAATCTCAGTAGCTCTTGTTCTATCGATTATGATTCTTGCAGGCGGGTTTATCATATACCAAAGATCCCATAAGAGAAAATGTGAAGATGAGAAATGGAATTCATTGTTCTTTTACCCTCTTCGAATCATGGAAAATGATTTGATAATGGGAATGGATGAGAAAAGTAGACAAGGAAAAAATGCTGGAGTTTTTGGAAGAGTATATGCATTGAATCTACCGAGTGGTGAAATAGTTGCTGTAAAAAACCTCATTAATTTCGGGAAGAAATCTCTGAAAAGTTTGAAGAGTGAGGTGAAGACGTTAGCTAAGACCAGGCATAAAAACATTGTCAAGATTCTCGGGTTATGTCTTTCGGAAGATTCCATTTTTTTGATATATGAATTCTTACCAAAGGGAAGCTTAGGCGACTTAATTTGTAGAGATGATTTTTGCTTAGATTGGGGTGTTAGATTGCGAATCGCAATTGGAGTAGCTCAAGGGCTAGCTTATCTTCATAAGGACCAGACGGTTTCTCTGAATATTCTTCACCGGAATGTCAAGTCAACGAACATTCTTTTGGATGAAGATCTTGTTCCGAAGCTTACCGATTTTGGTCTGGATCGTATCCTAGGGGACTCTGCATTTCAGTCTACGTTGGCCTCAGAATCTTCTCTGTCATGTTACAACCCACCAGAGCTTGGATACAGTAAAAGAGCTACAGAACAGATGGATGTTTACAGCTTTGGAGTTGTGTTGCTAGAGCTAGTAACAGGCCGGCAAGCAGAGCGAAGAGATCCCAGAGAAGAAGATTCTGTGGATATTCTCCAATGGGTGAGGCGAAAAGTCAACATAACGAATGGAAAACTGCAAGTGGTTGACTCGAAAGTATCAAAATGTTACCACAATGAGATGTTGGAGGTTTTGGACATTGCTCTTCGGTGCACTTCCGTCGTGCCTCAAAAACGACCCTCCATGTCCGAAGTTGTCAAGGCACTTCAATGTTCTGCTTCATTAGACAAGCATCGAGTTGATATCAGAGTATAG 2685 40.52 MAAKPSIITRPFFFTLTTLFTVFVLTSSSSEPDILLTFKSSIKDPNNFLSTWSNISTANYCNWTGITCTSAGGGAPPSITSLNLQSSNLSGEISSSICQLPNLAHLNLADNLFNQPIPLHLSQCTSLETLNLSNNLIWGTIPDQISQFGSLKVLDFSMNHVEGKIPEAISELKMLQVLKLGSNLLSGNLPINLFKNLTELNVLDLSQNVYLVSEIPSNIGNLEKLETLFLQGCGFHGKIPATFLGLKSLRILDLSLNDLGGIFPQKTLDSSLKNLVSFDVSQNKLFGSFPDGICNGRKGLINLNLHTNFFNGSIPNSSIKDCFNLERFQVQNNKFYGDFPSGLWSLPKIKLIRAENNRFSGEIPDSISMAVQLEQVQIDNNTFSGKLPFGLGSIRTLYRFSASLNNLYGQLPPNFCDSPLMSIINFSHNSLSGQIPEPKKCKKLVSLALANNNLTGQIPSSLSYLPVLTYLDLSDNNLTGPIPQELQNLKLALFNVSFNQLSGRVPYSLISGLPASFLQGNPDLCGQGLGNSCSNDPTKNHHHDANLTILICAIISVALVLSIMILAGGFIIYQRSHKRKCEDEKWNSLFFYPLRIMENDLIMGMDEKSRQGKNAGVFGRVYALNLPSGEIVAVKNLINFGKKSLKSLKSEVKTLAKTRHKNIVKILGLCLSEDSIFLIYEFLPKGSLGDLICRDDFCLDWGVRLRIAIGVAQGLAYLHKDQTVSLNILHRNVKSTNILLDEDLVPKLTDFGLDRILGDSAFQSTLASESSLSCYNPPELGYSKRATEQMDVYSFGVVLLELVTGRQAERRDPREEDSVDILQWVRRKVNITNGKLQVVDSKVSKCYHNEMLEVLDIALRCTSVVPQKRPSMSEVVKALQCSASLDKHRVDIRV 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 429185 432166 + Conep03aG0007500.1 Cone3ag0073 433532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0073 894 Gene3D Phosphorylase Kinase; domain 1 614 683 - -
Cone3ag0073 894 SUPERFAMILY L domain-like 29 295 - -
Cone3ag0073 894 Pfam Protein tyrosine and serine/threonine kinase 615 879 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0073 894 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 683 886 - -
Cone3ag0073 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 78 881 IPR050647 -
Cone3ag0073 894 Gene3D Transferase(Phosphotransferase) domain 1 684 891 - -
Cone3ag0073 894 Gene3D Ribonuclease Inhibitor 23 73 IPR032675 -
Cone3ag0073 894 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 596 682 - -
Cone3ag0073 894 FunFam Leucine-rich repeat family protein 30 190 - -
Cone3ag0073 894 SUPERFAMILY Protein kinase-like (PK-like) 615 881 IPR011009 -
Cone3ag0073 894 ProSiteProfiles Protein kinase domain profile. 607 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0073 894 Gene3D Ribonuclease Inhibitor 74 268 IPR032675 -
Cone3ag0073 894 Gene3D Ribonuclease Inhibitor 269 536 IPR032675 -
Cone3ag0073 894 SMART LRR_typ_2 100 124 IPR003591 -
Cone3ag0073 894 SMART LRR_typ_2 172 196 IPR003591 -
Cone3ag0073 894 SMART LRR_typ_2 197 222 IPR003591 -
Cone3ag0073 894 SMART LRR_typ_2 465 488 IPR003591 -
Cone3ag0073 894 SMART LRR_typ_2 272 296 IPR003591 -
Cone3ag0073 894 SMART LRR_typ_2 246 270 IPR003591 -
Cone3ag0073 894 SMART LRR_typ_2 125 148 IPR003591 -
Cone3ag0073 894 Pfam Leucine rich repeat 443 501 IPR001611 GO:0005515(InterPro)
Cone3ag0073 894 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515(InterPro)
Cone3ag0073 894 SUPERFAMILY L domain-like 213 532 - -
Cone3ag0073 894 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cone3ag0073 894 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 270 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0073 Cone-Chr3:429185 Cone7ag0878 Cone-Chr7:6807374 7.44E-57 dispersed
Cone10ag0059 Cone-Chr10:357003 Cone3ag0073 Cone-Chr3:429185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82644 PF01138 RNase_PH 4.90E-12 CL0329 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0073 - - - 0.0