Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0076 ATGATGACTCTGCCACCGGAAAACGCTAGCTCATTCACTGCGCTTCTGGAACTTCCGGCAACTCAAATCATGGAGCTCCTCCACTCGACGGACTCAGACGGAGCTCAGACGACGGTGACACTCTCCGGCGAGGCTCATCATCATCCAATCAACGACGAACACAAACCCTACTTTCACCCACTCGTCAGCAAATTGACCTTCCCATCGAACACAGCTCTAATCGAACGCGCTGCTAGGTTCTCAGTCTTCGCCGGAGTGCATTCGCCGGAGACGACCAGCTCCGTACCTTCAAAGTCAAGCGCGAATTTGGAAAAGGTGAAGAACGAACCGACCACGGAAACCGATTCGAACCTCAATGCATCACAGCCCATAGCCTCCGATCCAACGGTGGAGATCACAAACCAGAAGTCAACTAAGAGGAAGGAGCGCGAAAAGAAGGGAAAAGCGTCAACAAAGAAGAGCAAGAACGAAAGCTCTGAAGAGGCAGAGAAACTTCCATACGTTCACGTTCGAGCTCGTCGCGGTCAAGCTACAGACAGCCATAGCCTTGCAGAGCGAGCAAGGAGAGAGAAGATTAATGCTCGAATGAAGCTACTTCAGGAGCTGGTCCCCGGATGCAATAAGATAGCAGGAACGGCTTTAGTTCTGGATGAAATCATCAACCACGTGCAATCCTTGCAACGCCAAGTGGAGTTTTTGTCAATGAGACTTGCAGCAGTCAACCCAAGAGTTGATTTCGACCTTGACAGCATATTGGCCACAGAAAATGGATCCCTCATGGACAGTAACTACCCGAGCATTGTTGTGCCTACTATGTGGGCAGAGGACCCGAGCAGTGGAACCAGACAACAATATCAACAACAACAACAACAACAATGGAATCTAGATGCTCTTCACCAACCAGCTTGGGAGGGAAGGGAAGCTGAAAATCGTAACTTTATCACCTCTGATAACTCATTCTTGAGCTACGGCTCCTCTGCCACTTCAGCATCTCTGCACACAAATCATTTGAAGATGGAGCTGTGA 1026 49.71 MMTLPPENASSFTALLELPATQIMELLHSTDSDGAQTTVTLSGEAHHHPINDEHKPYFHPLVSKLTFPSNTALIERAARFSVFAGVHSPETTSSVPSKSSANLEKVKNEPTTETDSNLNASQPIASDPTVEITNQKSTKRKEREKKGKASTKKSKNESSEEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKIAGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFDLDSILATENGSLMDSNYPSIVVPTMWAEDPSSGTRQQYQQQQQQQWNLDALHQPAWEGREAENRNFITSDNSFLSYGSSATSASLHTNHLKMEL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 436798 442245 - Conep03aG0007800.1 Cone3ag0076 433535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0076 341 FunFam transcription factor bHLH48-like isoform X1 173 245 - -
Cone3ag0076 341 Gene3D - 173 245 IPR036638 GO:0046983(InterPro)
Cone3ag0076 341 CDD bHLH_AtBPE_like 166 251 - -
Cone3ag0076 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 291 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone3ag0076 341 Pfam Helix-loop-helix DNA-binding domain 180 227 IPR011598 GO:0046983(InterPro)
Cone3ag0076 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 244 IPR036638 GO:0046983(InterPro)
Cone3ag0076 341 MobiDBLite consensus disorder prediction 87 133 - -
Cone3ag0076 341 MobiDBLite consensus disorder prediction 87 164 - -
Cone3ag0076 341 Coils Coil 216 236 - -
Cone3ag0076 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 226 IPR011598 GO:0046983(InterPro)
Cone3ag0076 341 SMART finulus 182 232 IPR011598 GO:0046983(InterPro)
Cone3ag0076 341 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0076 Cone-Chr3:436798 Cone8ag1204 Cone-Chr8:10239336 3.34E-42 dispersed
Cone3ag0076 Cone-Chr3:436798 Cone10ag0061 Cone-Chr10:362022 2.24E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45753 PF02514 CobN-Mg_chel 1.60E-46 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0076 - - - 0.0