Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0078 ATGACGCACTCCTTCCCATTTACTTCATTTTGTATCTCTCTTGTAATCTTCTCAGTTCCTCACTGTTCAACTCTCAACTCAGATGGTCTCTCACTTCTCGCACTCAAAGCCGCCATTGAGGCGGACCCAACTCGGGTACTCGACTCATGGACTGAGTCAGACTCGACCCCTTGTCACTGGCCAGGAATCGTCTGCACTCGCAACCGAGTCACTCAACTCGCTCTCCCCAACAAAGGCTTCACCGGTTACATCCCGTCTGAGCTCGGTCACCTTAACTTGCTCAAACGACTCAGTCTCGCTCACAACAACTTCTCTAAACCTATTCCTTCTCGTTTATTCGATGCCACAAGGCTCATCGTTCTCGACCTCTCTCACAACTCGTTCTCCGGTCTAGTCCCCGATCAGATCAAGAACCTCACAGACCTCCGGCATTTGGATTTGTCATCGAATCTTCTCAACGGGTCGTTACCGGAAAGCGTTGTTCAGCTCACCGACCTCGTCGGAACACTGAACTTGTCGTTCAACCAGTTCTCCGGCGGAGTTCCGCCTTCGTATGGTGATCTTCCGGTGCTGTTGAATCTCGATCTCCGGAACAACAACCTCACCGGGAAAATCCCTCAGGTGGGGTCCTTATTGGACCAGGGGCCGACAGCTTTTTCCGGTAATCCTGGTCTATGCGGGTTTCCTCTCCATGCATTGTGCCCAGAAGCTCAAAATCCTCGGGTTTTCCCAAAATACCCTCAGAACCCCAGCTCCCCTAATGTCGGCGACGGACCGGCGAAACAGAAATCCGGTAGCGGGTCGGTGATCTTGTCGCTGATTTTGGGCATTTCAGTCGTGGTCGTAGTCGTTTCCGTTTCGGTCTGGATGTTGCGGAGAAAACGGTACTCTGACGAGGGCAAAACGGGAAAAGAAAACATACAGGGACGTGAGGAGGTAGTCGTCGACGTGGAAGGACAGAAGGGTAAATTCATGCTGATAGACGAGGGGTTTAATTTGGAATTAGAGGATTTGTTGAGGGCTTCTGCTTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTTTACAAGGTGGTGGTGCGAAGAGGGCGGGGATCAGGTTTGGCGGCGCCTACGATTGTTGCGGTGAGGAGATTGAGTGAAGGCGAAGCCACGTGGCGGTTGAAAGAGTTTGAATCCGAGGTGGAGGGTATTGGGAGGGTCCACCACCCGAATATCGTACGGTTAAGAGCTTACTACTATGCACATGATGAGAAACTACTGGTCACTGATTTCATCCGAAATGGGAATTTGTGGGCCAAACTTCATGAAGATCCATCTGGTGTTGAAACACCGGTATCATGGGCTACACGGTTAAAAATCGCGCAAGGAATCGCCGGTGGTTTAACAAGTATTCACGATTCTACACCTCGAAAGTATGTCCATGGTAACATAAAGTCAACAAAGATCCTTCTCGATGATGATCTCCAAGCTTACATCTCCGATTTTGGACTAGACCGCCTTGTGTCCAGAACCTCTAAATTTTCGAGCATGCCCTCTAAGAAGTTGACTAACTACTCTCTAACAGGCTCACAAATTTCAAAGTCATCTGTTATGTACTTAGCGCCTGAGGTTCGGTTTTCTGGGGCCAAGTATACACAAAAGAGCGATGTGTATTCGTTTGGGGTTGTGCTTTTGGAGATATTAACGGGTAAGGGACCGGATTTTGGAGGACCTGAAAATGATGGTAAAGGATTAGAGAGTTTTGTGAGGAAGGCATTTAGGGAGGAGCGTCCACTTTCCGAGGTTATCGACCCGAAACTTATGCACGAGATTTATGCAAAGAAACAGGTTCTAAAGACATTCCATGTTGCCCTCAATTGTACAGAAATTGACCCCGAGGTTCGGCCTAGGATGAGGATGGTTTCAGAGAGTCTTGATCGCATAATGTAA 1929 49.04 MTHSFPFTSFCISLVIFSVPHCSTLNSDGLSLLALKAAIEADPTRVLDSWTESDSTPCHWPGIVCTRNRVTQLALPNKGFTGYIPSELGHLNLLKRLSLAHNNFSKPIPSRLFDATRLIVLDLSHNSFSGLVPDQIKNLTDLRHLDLSSNLLNGSLPESVVQLTDLVGTLNLSFNQFSGGVPPSYGDLPVLLNLDLRNNNLTGKIPQVGSLLDQGPTAFSGNPGLCGFPLHALCPEAQNPRVFPKYPQNPSSPNVGDGPAKQKSGSGSVILSLILGISVVVVVVSVSVWMLRRKRYSDEGKTGKENIQGREEVVVDVEGQKGKFMLIDEGFNLELEDLLRASAYVVGKSRSGIVYKVVVRRGRGSGLAAPTIVAVRRLSEGEATWRLKEFESEVEGIGRVHHPNIVRLRAYYYAHDEKLLVTDFIRNGNLWAKLHEDPSGVETPVSWATRLKIAQGIAGGLTSIHDSTPRKYVHGNIKSTKILLDDDLQAYISDFGLDRLVSRTSKFSSMPSKKLTNYSLTGSQISKSSVMYLAPEVRFSGAKYTQKSDVYSFGVVLLEILTGKGPDFGGPENDGKGLESFVRKAFREERPLSEVIDPKLMHEIYAKKQVLKTFHVALNCTEIDPEVRPRMRMVSESLDRIM 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 451120 453535 + Conep03aG0008000.1 Cone3ag0078 433537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0078 642 Pfam Protein tyrosine and serine/threonine kinase 346 638 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0078 642 SUPERFAMILY Protein kinase-like (PK-like) 345 637 IPR011009 -
Cone3ag0078 642 Pfam Leucine Rich Repeat 192 207 IPR001611 GO:0005515(InterPro)
Cone3ag0078 642 PRINTS Leucine-rich repeat signature 139 152 - -
Cone3ag0078 642 PRINTS Leucine-rich repeat signature 118 131 - -
Cone3ag0078 642 FunFam Leucine-rich repeat receptor-like kinase 30 140 - -
Cone3ag0078 642 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Cone3ag0078 642 Gene3D Ribonuclease Inhibitor 166 231 IPR032675 -
Cone3ag0078 642 Gene3D Ribonuclease Inhibitor 24 163 IPR032675 -
Cone3ag0078 642 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 641 IPR046959 -
Cone3ag0078 642 Gene3D Transferase(Phosphotransferase) domain 1 425 642 - -
Cone3ag0078 642 FunFam Leucine-rich repeat receptor-like protein kinase 141 236 - -
Cone3ag0078 642 ProSiteProfiles Protein kinase domain profile. 340 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0078 642 SUPERFAMILY L domain-like 22 232 - -
Cone3ag0078 642 MobiDBLite consensus disorder prediction 244 261 - -
Cone3ag0078 642 Pfam Leucine rich repeat 94 152 IPR001611 GO:0005515(InterPro)
Cone3ag0078 642 MobiDBLite consensus disorder prediction 241 261 - -
Cone3ag0078 642 Gene3D Phosphorylase Kinase; domain 1 323 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0078 Cone-Chr3:451120 Cone6ag0425 Cone-Chr6:2063811 3.16E-64 dispersed
Cone10ag0063 Cone-Chr10:374393 Cone3ag0078 Cone-Chr3:451120 6.30e-311 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82645 PF03385 STELLO 6.40E-11 CL0110 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0078 - - - 0.0