Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0079 ATGGAGTCAAATACCCACCATAGTTTCCAGCTGCCGAGCTCTGGTTTATTGCGGCTGAGCTCTGCTCCGGGCTCTCTGAACGCTAATATCTCGGAAGGTTCTGAATCTCAGAGATTGATTTCGAGATTCATGAATTACAGCAGGAATTCTACTACGGATTCTGAATCTTCGCCTAGATTTCAGGAATTTGAAGATAAATCTTCCATCACGACCGCGGCGGCGGAGGTTATGAATTGGAGAAATTCTCAGCATGGCTTTTCTGGGTTGCCTCCACATTATCCGAGGCAGAGCTCGAGTACGAGTATCTCTTCTTCTTCGTTTTCCCATTCTTCTTCTGCCATGGATGCGTCTTATGGATTGATGGGTTCAAATATTTCTAGACAGAGCAGCTCCCCTGCTGGACTTTTCTCCCATTTATCTCTTCCAAACGGCTATGCAAATTACCGAGCAGTGAATGGTAATAAAGGCGGAGAAATCAGTCCGGCTTCAAACAAATCAAGGAGTCAGCTTAGCCTATCATCTTCTAGACCACCACCTTCTTCCTTGGGGATTTTGTCGCAAATCTTGGAAGTTGAAAACGAAAGCATACTGGGAAATAGCCCTTCTTGGAGCAATGATTCATCTCCTAGTTTCATGGAGAATTATTCCGGGTTTAGACGGGAACGGGATAATCAGATGAATAATGGCGAGATTGGACATAATCGAGTTCACTTATTATCGCATCACTTGAGTTTGCCAAAGAGCTCGTCCGATGTAGTAGCCGTGGAAAAGATGTTGCAATTCCAAGATGCTGTTCCTTGTAAGATTAGAGCCAAACGCGGTTGTGCTACACATCCTCGTAGTATAGCGGAAAGGGTTAGAAGAACCCGGATCAGCGAACGAATGAGGAAACTGCAAGAGCTTGTTCCGAACATGGATAAGCAAACGAACACGGCTGACATGTTAGACTTGGCTGTTAATTATATTAAGGATCTTCAGAAGCAGTTCCAGACGCTTAGCGATAACCGGGCAAAGTGCAAATGTTTGAGTATACAGAAGACAGTTTCAAATCAAATCGTGTGA 1062 44.44 MESNTHHSFQLPSSGLLRLSSAPGSLNANISEGSESQRLISRFMNYSRNSTTDSESSPRFQEFEDKSSITTAAAEVMNWRNSQHGFSGLPPHYPRQSSSTSISSSSFSHSSSAMDASYGLMGSNISRQSSSPAGLFSHLSLPNGYANYRAVNGNKGGEISPASNKSRSQLSLSSSRPPPSSLGILSQILEVENESILGNSPSWSNDSSPSFMENYSGFRRERDNQMNNGEIGHNRVHLLSHHLSLPKSSSDVVAVEKMLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVNYIKDLQKQFQTLSDNRAKCKCLSIQKTVSNQIV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 454478 456982 + Conep03aG0008100.1 Cone3ag0079 433538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0079 353 Gene3D - 276 348 IPR036638 GO:0046983(InterPro)
Cone3ag0079 353 MobiDBLite consensus disorder prediction 157 179 - -
Cone3ag0079 353 FunFam Transcription factor bHLH130 family 276 345 - -
Cone3ag0079 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 325 IPR011598 GO:0046983(InterPro)
Cone3ag0079 353 MobiDBLite consensus disorder prediction 87 106 - -
Cone3ag0079 353 SMART finulus 281 331 IPR011598 GO:0046983(InterPro)
Cone3ag0079 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 340 IPR036638 GO:0046983(InterPro)
Cone3ag0079 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 342 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone3ag0079 353 Pfam Helix-loop-helix DNA-binding domain 281 326 IPR011598 GO:0046983(InterPro)
Cone3ag0079 353 MobiDBLite consensus disorder prediction 92 106 - -
Cone3ag0079 353 MobiDBLite consensus disorder prediction 156 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0328 Cone-Chr17:1536959 Cone3ag0079 Cone-Chr3:454478 2.30E-52 dispersed
Cone1ag0428 Cone-Chr1:3815036 Cone3ag0079 Cone-Chr3:454478 8.05E-61 dispersed
Cone20ag0703 Cone-Chr20:4487995 Cone3ag0079 Cone-Chr3:454478 4.93E-34 dispersed
Cone20ag1083 Cone-Chr20:7521477 Cone3ag0079 Cone-Chr3:454478 1.04E-55 dispersed
Cone3ag0079 Cone-Chr3:454478 Cone5ag1472 Cone-Chr5:9790664 6.99E-62 dispersed
Cone10ag0064 Cone-Chr10:378889 Cone3ag0079 Cone-Chr3:454478 1.95E-206 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45754 PF04862 DUF642 5.10E-16 CL0202 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0079 - - - 0.0