Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0081 ATGAGACCTCCAACGCTGAACATTTTCCCATCTCAACCTATGCACGTAGTACATCCCTCGTCTTCAACAAAAGTTAGTACGGTATTAGTTTCTCCGGCGAATAGCGGGCCGAAAAGATTAGCGGAGCCGGGAAGTATGGAGTTGGCGAATCTGGGCGCCCCCTCTGCATCTGGAGCTGGACCTGAACCTAACAAGACTATCAAGCGTGAGGGTAACCGTAAAGGACAGCAAGACAGACCTAAGACACCGGATCCTAAGACGTTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTGAGAAAAAAGGCATATGTACAGCAGTTAGAGTCAAGTAGGATTAAGCTTACACAGCTAGAGCAAGAGCTACAGCGAGCCAGAGCTCAGGGCATGTTCTTAGGAGGAGGAGGAGAGGAAGGACTTGGCGTTGGTATGGCCAATATTAGTTCCGTTTTTTATGAGACTAATGGTATAACTGTATTAGATGGGGCGGTGTTTGACATGGAGTATGCACGGTGGTTGGAGGAGCACCACCGCATGATGTGTGAGCTCCGGGCTGCAGTGCAAGAGCATTTGCCGGAGAACGAGCTGAGAATGTTTGTAGAGAATTGCATGGCTCATTACGATGAAATTCTGAACCTAAAAAGCATGGTGGCTAAATCAGACGTGTTTCATCTTGTTTCCGGCACGTGGAAGACTCTCGCCGAGCGTTGTTTCATGTGGATTGGTGGGTTTAGGCCATCCGACATCATCAAGGTAATTATGGGTCAAATAGAGCCATTGACGGAGCAGCAAATATTAGGGATTTGTGGGTTACAGCAATCAACTCAAGAAGCTGAAGAAGCTTTGTCTCAAGGCCTTGAAGCCCTAAATCAATCTTTGTCAGAAGCCATTACCTCTGATTCCTTGAGCTCTCCTCCTAACATGGCCAACTACATGGCTCAAATGGCCCTCGCCATTAACAAGCTCTCCAACGTAGAAACCTTTGTTCGACAGGCGGATAATTTAAGACACCAAACCATTCACCGGCTATACCAAATCTTAACGACCCGTCAAACTGCAAGGTGTTTGTTAGCAATGGCAGAATACTTCCATCGTCTTCGAGCTCTCAGTTCACTCTGGTTAGCTCGGCCTCGACAGGAATAG 1155 47.79 MRPPTLNIFPSQPMHVVHPSSSTKVSTVLVSPANSGPKRLAEPGSMELANLGAPSASGAGPEPNKTIKREGNRKGQQDRPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARAQGMFLGGGGEEGLGVGMANISSVFYETNGITVLDGAVFDMEYARWLEEHHRMMCELRAAVQEHLPENELRMFVENCMAHYDEILNLKSMVAKSDVFHLVSGTWKTLAERCFMWIGGFRPSDIIKVIMGQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSEAITSDSLSSPPNMANYMAQMALAINKLSNVETFVRQADNLRHQTIHRLYQILTTRQTARCLLAMAEYFHRLRALSSLWLARPRQE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 472652 475631 - Conep03aG0008300.1 Cone3ag0081 433540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0081 384 PANTHER TRANSCRIPTION FACTOR TGA9 4 383 - -
Cone3ag0081 384 SMART brlzneu 82 146 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0081 384 Coils Coil 105 132 - -
Cone3ag0081 384 ProSiteProfiles DOG1 domain profile. 166 380 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone3ag0081 384 Pfam Seed dormancy control 184 258 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone3ag0081 384 SUPERFAMILY Leucine zipper domain 86 128 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0081 384 MobiDBLite consensus disorder prediction 66 87 - -
Cone3ag0081 384 FunFam BZIP family transcription factor 85 134 - -
Cone3ag0081 384 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 84 128 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0081 384 Gene3D - 85 136 - -
Cone3ag0081 384 MobiDBLite consensus disorder prediction 1 20 - -
Cone3ag0081 384 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 89 104 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0081 384 Pfam bZIP transcription factor 86 126 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0081 384 MobiDBLite consensus disorder prediction 30 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0533 Cone-Chr1:5313450 Cone3ag0081 Cone-Chr3:472652 6.95E-101 dispersed
Cone3ag0081 Cone-Chr3:472652 Cone5ag0986 Cone-Chr5:4227304 3.53E-115 dispersed
Cone10ag0067 Cone-Chr10:388728 Cone3ag0081 Cone-Chr3:472652 7.09E-213 wgd
Cone13ag0546 Cone-Chr13:5710710 Cone3ag0081 Cone-Chr3:472652 6.70E-177 wgd
Cone19ag0496 Cone-Chr19:4105973 Cone3ag0081 Cone-Chr3:472652 1.41E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45755 PF05691 Raffinose_syn 2.50E-26 CL0058 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0081 K14431 - rcu:8277515 566.614