Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0092 ATGGCCGATGGTGAGGATATTCAGCCTCTCGTTTGCGACAATGGGACGGGAATGGTCAAGGCTGGATTTGCCGGAGATGATGCCCCAAGGGCTGTGTTCCCTAGTATTGTAGGTCGGCCTCGTCATACAGGTGTGATGGTTGGTATGGGACAAAAGGATGCCTATGTTGGAGACGAAGCTCAATCCAAAAGAGGTATTTTGACTCTAAAATACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTTCGAGTGGCTCCAGAAGAGCACCCTGTTCTCCTAACCGAAGCTCCCCTTAATCCCAAGGCTAACAGAGAGAAAATGACTCAGATTATGTTTGAGACCTTCAATACCCCAGCTATGTATGTTGCAATCCAGGCCGTCCTCTCCCTTTATGCTAGTGGACGTACAACTGGTATTGTTCTTGATTCCGGGGATGGTGTAAGCCACACAGTTCCCATATATGAAGGCTATGCTCTCCCACATGCCATTCTCCGTCTGGACCTAGCTGGACGTGATCTAACTGATGCTCTAATGAAAATCTTGACGGAACGTGGTTACTCTTTCACCACCACTGCAGAACGGGAAATTGTAAGGGACGTGAAGGAGAAGCTAGCCTACATCGCTCTTGACTATGAGCAAGAGCTAGAGACCTCAAAAACCAGTTCGGCTGTGGAGAAGAGCTATGAGCTGCCCGACGGGCAGGTGATCACGATTGGGGCCGAAAGATTCCGTTGCCCAGAAGTCCTGTTCCAACCTTCTATGATAGGAATGGAAGCAGCGGGTATTCATGAAACCACATATAACTCTATCATGAAGTGTGATGTTGATATCAGGAAGGATCTTTATGGGAATATTGTTCTTAGTGGCGGGTCCACCATGTTCCCTGGAATCGCTGATAGGATGAGCAAAGAGATTACAGCATTAGCTCCAAGTAGCATGAAGATTAAGGTGGTCGCTCCACCTGAGAGGAAGTATAGTGTCTGGATTGGAGGCTCTATCTTGGCATCACTCAGTACCTTCCAACAGATGTGGATTGCAAAGGCCGAGTATGATGAGTCTGGACCCTCAATTGTTCACAGGAAATGCTTCTAA 1134 47.44 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 533119 535218 - Conep03aG0009400.1 Cone3ag0092 433551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0092 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone3ag0092 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cone3ag0092 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone3ag0092 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cone3ag0092 377 PRINTS Actin signature 51 62 IPR004000 -
Cone3ag0092 377 PRINTS Actin signature 238 254 IPR004000 -
Cone3ag0092 377 PRINTS Actin signature 63 85 IPR004000 -
Cone3ag0092 377 PRINTS Actin signature 142 161 IPR004000 -
Cone3ag0092 377 PRINTS Actin signature 28 37 IPR004000 -
Cone3ag0092 377 PRINTS Actin signature 117 130 IPR004000 -
Cone3ag0092 377 FunFam Putative actin-related protein 5 341 369 - -
Cone3ag0092 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cone3ag0092 377 FunFam Major actin 259 340 - -
Cone3ag0092 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone3ag0092 377 Pfam Actin 5 377 IPR004000 -
Cone3ag0092 377 SMART actin_3 7 377 IPR004000 -
Cone3ag0092 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Cone3ag0092 377 FunFam Actin, muscle 182 273 - -
Cone3ag0092 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cone3ag0092 377 Gene3D - 140 340 - -
Cone3ag0092 377 Gene3D - 10 371 - -
Cone3ag0092 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cone3ag0092 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1443 Cone-Chr18:9708772 Cone3ag0092 Cone-Chr3:533119 6.43E-118 dispersed
Cone1ag0645 Cone-Chr1:6178565 Cone3ag0092 Cone-Chr3:533119 1.19E-273 dispersed
Cone1ag1283 Cone-Chr1:56236946 Cone3ag0092 Cone-Chr3:533119 3.26E-271 dispersed
Cone2ag0697 Cone-Chr2:32472495 Cone3ag0092 Cone-Chr3:533119 1.33E-87 dispersed
Cone3ag0092 Cone-Chr3:533119 Cone3ag0336 Cone-Chr3:1708645 8.35E-274 dispersed
Cone10ag0079 Cone-Chr10:448303 Cone3ag0092 Cone-Chr3:533119 2.17E-66 transposed
Cone12ag0934 Cone-Chr12:8148048 Cone3ag0092 Cone-Chr3:533119 2.05E-28 transposed
Cone12ag0933 Cone-Chr12:8147612 Cone3ag0092 Cone-Chr3:533119 3.37E-34 transposed
Cone10ag0078 Cone-Chr10:447368 Cone3ag0092 Cone-Chr3:533119 1.83E-35 wgd
Cone13ag0532 Cone-Chr13:5595558 Cone3ag0092 Cone-Chr3:533119 1.06E-276 wgd
Cone19ag0481 Cone-Chr19:3952694 Cone3ag0092 Cone-Chr3:533119 1.44E-274 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0092 K10355 - gmx:100811630 754.977