Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0097 ATGGCCTTTGGAGGGAGTGCTTGCAAAGAAGTTTTTGAGTCGGATTCCTCGGTCTTGAGCTATGACATGACAATACCTAAACTAGAGGCGAAGTGTACATCTAAGAAAACAATATCCCTATCTTCCGGTGCAAGAAAACACAGAAATTTCTCAACCAATGGCGTGCATGAACTGCTTGAATGTCCTGTCTGCACCAGTTTGATGTACCCTCCAATTTATCAGTGCCCAAACGGCCACACATTATGTTCAAACTGCAAAATCCGGGTCAACAACTGCTGCCCTGCTTGCCGGCAAGAGCTGGGGAACATAAGGTGCTTGGCTTTGGAGAAGATAGCTGAATCATTAGAACTCCCTTGTTGCTACCAGAATCTTGGCTGTCCAGACATCTTCCCTTATTACAGCAAGCTTAAGCACGAGCAAAATTGTTCTTTTCGCCCCTACAATTGTCCCTATGCCGGGTCAGAGTGCTCTGTTACTGGTGATATCCCAACCCTAGTTTCTCATCTCAAGGATGATCACAAAGTTGACATGCATGATGGGTGTACTTTCAATCATCGGTATGTCAAGTCAAACCCACATGAAGTCGAAAATGCCACGTGGATGCTGACGGTTTTCAACTGCTTTGGAAGACAATTTTGCTTGCACTTTGAAGCTTTTCAGTTGGGAACAGCTCCGGTTTACATGGCATTTGTACGGTTCATGGGCGATGAAAATGAAGCGAGGAAATTTGGGTACAGTTTAGAAGTTGGAAATAACAGCCGGAAATTAATATGGCAAGGAATTCCGAGGAGCATCCATGACTGTCACCGAAAAGTTCGTGACAGCCAGGATGGTTTGATTATTCCGAGAAGTCTTGCTCTCTACTTCTCAGGCGGGGATAGACAAGAGCTCAAGTTAAGGATCACTGGCCGGATATGGAAAGAAGAATGA 930 45.05 MAFGGSACKEVFESDSSVLSYDMTIPKLEAKCTSKKTISLSSGARKHRNFSTNGVHELLECPVCTSLMYPPIYQCPNGHTLCSNCKIRVNNCCPACRQELGNIRCLALEKIAESLELPCCYQNLGCPDIFPYYSKLKHEQNCSFRPYNCPYAGSECSVTGDIPTLVSHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFVRFMGDENEARKFGYSLEVGNNSRKLIWQGIPRSIHDCHRKVRDSQDGLIIPRSLALYFSGGDRQELKLRITGRIWKEE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 554710 557418 + Conep03aG0009900.1 Cone3ag0097 433556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0097 309 SUPERFAMILY TRAF domain-like 114 306 - -
Cone3ag0097 309 Pfam Sina, zinc finger 110 185 - -
Cone3ag0097 309 Pfam Sina, TRAF-like domain 205 302 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone3ag0097 309 CDD RING-HC_SIAHs 59 97 - -
Cone3ag0097 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Cone3ag0097 309 SUPERFAMILY RING/U-box 49 101 - -
Cone3ag0097 309 FunFam E3 ubiquitin-protein ligase SINAT3 111 169 - -
Cone3ag0097 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270(InterPro)
Cone3ag0097 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Cone3ag0097 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 149 IPR013083 -
Cone3ag0097 309 Gene3D Classic Zinc Finger 150 171 - -
Cone3ag0097 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 304 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone3ag0097 309 CDD Sina 175 303 - -
Cone3ag0097 309 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 61 96 IPR049548 -
Cone3ag0097 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 172 302 IPR008974 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0412 Cone-Chr1:3596196 Cone3ag0097 Cone-Chr3:554710 5.46E-162 dispersed
Cone3ag0097 Cone-Chr3:554710 Cone5ag0687 Cone-Chr5:2947117 7.61E-166 dispersed
Cone13ag0520 Cone-Chr13:5506266 Cone3ag0097 Cone-Chr3:554710 9.98E-152 wgd
Cone19ag0472 Cone-Chr19:3865754 Cone3ag0097 Cone-Chr3:554710 8.78E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0097 K04506 - rcu:8260973 535.028