Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0136 ATGGATCAAGAAATCGACGTGCCGCCATTTTTTCTGTGCCCCATATCACTCGAGATCATGAAAGATCCCGTCACAATCTCCACCGGCATCACTTACGACCGTGAAAGCATAGAGAAATGGCTCTTCTCCAACAAGAACACCACCTGCCCCGTCACAAAACAGTCCCTCGTCATCTCTGACTCCGATCTAATTCCGAACCATACTCTCCGCCGTCTGATCCAATCATGGTGCACCATGAACGCGTCTCATGGCGTCGAACGAATCCCCACTCCAAAACCTCCAATCAGCAAAACCCAAATCGTTAAACTCCTCAACGACGCCAAAGAGGCTTCTTCTCCTCTCACTCAGCTCAAATGCCTACAAACTGTTCGATTAATTGCGTTGGAGAACGAAACCAACAAACGTTGCATTGAAACCGCCGGGGCAGCTCAATTTCTAGCTTCTATCGTTACGAGCTCAATCTCTTCGTCCCAACACGAGGATCAATCTCGTGATGTTGGATCGGATTTTTCGAGATCCGCCCATGAAGCATTAAGCATCCTCTACACTCTCCAACTCTCCGAAACAAGCTTAAAATCTCTACTAGTTAATTACAACGGCGAATTCATCGACTCATTGACTAAAGTAATCCAACGAGGAAGCTACGAGTCTAGGGCTTACGCCGTAATGTTATTAAAAGCCATGTTTGAAGTAGCCGACCCAATCCAGTTGATCAGTTCAAAGCCAGAGTTTTTCACGGGAATAATCCAAGTTCTCAACGATCAAATCTCCCACCAAGCTTCGACCTCGGCTTTGCAAATCTTAATCCAGCTATGTTCATGGGGACGGAACCGAGTGAAAGCCGTGGAAGCCAACGGGGTTTCAGTATTAGTCGAGCTTCTTCTAGATTGTTCCGAGAAGAGAGTCTTGGAAATGGCGCTAGTCGCATTGGACTTGTTATGTGGATGTGCGGAGGGGCGGGCTGAGTTGTTGGGCCATGGGGCGGGCTTGGCCATTGTGTCGAAGAAGATTCTTAGGGTATCGCAAAGCGGGAGCGAACGAGCGGTTAGGATCCTGTATTCAGTTTCGAGATTCTCGGGAAGTTCAAGCGTTGTTCAAGATATGTTGCAACTAGGTGTAGCGGCGAAGCTATGTTTGTTGCTACAAGTAGATTGTGGGTACAAGACCAAGGAGAGGGCTAATGAGATTTTGAAGATGCATGCTAGGGTTTGGAGGAGTTCTCCATGTATACCGGCCAATTTGCTTTCTTCATACCCGATTTGA 1263 47.51 MDQEIDVPPFFLCPISLEIMKDPVTISTGITYDRESIEKWLFSNKNTTCPVTKQSLVISDSDLIPNHTLRRLIQSWCTMNASHGVERIPTPKPPISKTQIVKLLNDAKEASSPLTQLKCLQTVRLIALENETNKRCIETAGAAQFLASIVTSSISSSQHEDQSRDVGSDFSRSAHEALSILYTLQLSETSLKSLLVNYNGEFIDSLTKVIQRGSYESRAYAVMLLKAMFEVADPIQLISSKPEFFTGIIQVLNDQISHQASTSALQILIQLCSWGRNRVKAVEANGVSVLVELLLDCSEKRVLEMALVALDLLCGCAEGRAELLGHGAGLAIVSKKILRVSQSGSERAVRILYSVSRFSGSSSVVQDMLQLGVAAKLCLLLQVDCGYKTKERANEILKMHARVWRSSPCIPANLLSSYPI 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 756341 757874 - Conep03aG0013900.1 Cone3ag0136 433595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0136 420 PANTHER WDSAM1 PROTEIN 3 417 IPR045185 GO:0061630(InterPro)
Cone3ag0136 420 Gene3D - 93 405 IPR011989 -
Cone3ag0136 420 SUPERFAMILY ARM repeat 91 398 IPR016024 -
Cone3ag0136 420 ProSiteProfiles U-box domain profile. 6 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone3ag0136 420 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Cone3ag0136 420 SMART Ubox_2 10 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone3ag0136 420 Pfam U-box domain 7 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone3ag0136 420 SUPERFAMILY RING/U-box 4 83 - -
Cone3ag0136 420 CDD RING-Ubox_PUB 8 60 IPR045210 -
Cone3ag0136 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0996 Cone-Chr10:6791780 Cone3ag0136 Cone-Chr3:756341 1.51E-64 dispersed
Cone11ag1421 Cone-Chr11:10164764 Cone3ag0136 Cone-Chr3:756341 9.43E-163 dispersed
Cone19ag0724 Cone-Chr19:5987822 Cone3ag0136 Cone-Chr3:756341 4.98E-66 dispersed
Cone3ag0136 Cone-Chr3:756341 Cone5ag1318 Cone-Chr5:7677052 3.25E-90 dispersed
Cone10ag0123 Cone-Chr10:628654 Cone3ag0136 Cone-Chr3:756341 1.99E-280 wgd
Cone13ag0469 Cone-Chr13:5129164 Cone3ag0136 Cone-Chr3:756341 2.33E-155 wgd
Cone18ag0170 Cone-Chr18:886262 Cone3ag0136 Cone-Chr3:756341 1.75E-165 wgd
Cone19ag1117 Cone-Chr19:8027342 Cone3ag0136 Cone-Chr3:756341 7.10E-13 wgd
Cone19ag0427 Cone-Chr19:3532185 Cone3ag0136 Cone-Chr3:756341 2.58E-157 wgd
Cone3ag0136 Cone-Chr3:756341 Cone5ag1317 Cone-Chr5:7662685 2.47E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0136 - - - 0.0