Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0138 ATGATGGCTACGTACTTTCATGGCAACTCGGATCAAATCCAAGCCGCAGATCACGGCGGCCTACAGACCCTAGTACTTATGAACCACGGCTACGTTCCATACCCCGACACTCCTCCCCCACCAGCACAACCTCCGACCAATTTGGTGTTCCTCAACCCACCTCCTCCATTAACTAACTCCTTACCTCCCCATGCCCACTTTTCTCACGCGCCACCGTCCCACGCCCAACAATTCGTCACCTTCCCACTTCCCTCCACCACATCCAATACAACTACCACCACCACTTCCCCCTCCTCTCAATACGACGTTTCAGTCTCCGCCCTGCATGGCAGTTTCATCCCCCACGTCCAGTACAATCTCTGGAACCCAGTCGGAGTTGACCCATCTACGGCATCGCGTGAAACTCCACGCGCTCAACAGGGACTCTCTCTAAGCCTCTCGTCAGAACACCCAGATGCCGGATACGGATCCTTCCAAACTGATCAGCGTCATGAAGTACTTCCCTCTTCTCAATCCCAGGCCCAGCAAGCAATTTCCGGCCGATCACCTAACTCGTCTGCTTCCGGGACTACAGTTAATATCGGAGCTCGGAATAATATGCAGAGAGTTTTGCTCAGTTCTAGATACATGAGGGCGACCCAAGAGCTTCTAGAAGAGGTTGTAAGTGTGGGTAATAACGGAGTTCACACGATGGAATCATTGAAGAAGGGGGGTAGTAGTCTGCAGCAAATGAAGCTGACCGGAGAGTCGTCGGTGGGTGGTTCCGGAGATGGTTCCATTGGGTCGGAAGCAACCACAGAAAAACATGGTAACAGCGAGCTTTCAACTGCTGAACGGCAAGAAATTCAGATGAAGAAGGCTAAGCTTATTAGCATGCTTGATGAGGTGGAGCAGAGGTACAGACAATACCACCACCAAATGCAAATAGTGACATCAGCGTTCGAGCAAGTAGCTGGAACCGGGTCAGCAAGAACATACACTTCGCTAGCACTCCTAACGATATCGAAACAATTCCGGTGCTTGAAAGACACGATCACCAGCCAAATCCGAGCAGCTAACAAGAGGTTAGGGGAAGAAGAAAGCCTCGGAAAGAAGGAAGGTTCTAGACTCAAATACGTTGACCATCATCTCCGGCAACAACGTGCTCTTCAGAAGTTGGGAATGATCCAGCAAAATGCTTGGAGACCCCAGAGAGGGTTGCCCGAAAGATCTGTTTCCGTTCTTCGCGCATGGCTCTTCGAGCACTTCCTCCACCCTTATCCAAAGGATTCGGACAAGCACATGCTTGCGAAGCAGACGGGGCTGACCAGGAGCCAGGTTTCGAATTGGTTCATAAATGCACGGGTTCGGCTTTGGAAACCAATGGTAGAAGAGATGTACCTGGAGGAAATCAAGGAGCAAGAACAGAATGGATCAGAGGGAGGCAACAAAAGAATGAACAAGACCAATGCTAATAATAATGAAGACTCAACAATTTCTAAGTCAGCCTCCACTCTACAAGAGAAATCTTGTGCTGCTGCTGAAAGTCAAAGTCAACCTCCGACAAGCCCGAATGCTGTTCTGTCCCCAGTACGAGGAAATGTTCGGAACCAATCTGGTTTTATTACACTCATTGGGTCATCAGAACTGGACGGAATCACACAAGGAAGTCCTAAAAAACTGAGAGATTCCGGACAAGAACACAACAACAATAGTAATGAGCATGTTTTTATGAATTACAGTAATGAAAATCAGCAGAGTAGGGACGGCTACTCCTTTATGGGAGGGTTCGGACAATACCCGATTGGGGAAATCGTGCGGTTTGAGGCGGACCAGTTTACATCAAGGTTTTCATCCGGAAATGGAGTGTCTCTCACTCTAGGGCTTCCTCATGGTGAAAACCTTTCTTTATCAGCAGCTCATCAGACTTTCCTTCCTCCGAATCAAAGCATTCATTTGGGGAGAAGGGAGGAAATGGAAGAACAGAATGAGTTTGGTGCAATAAGCAGTTCGACAACAGTACCACACTCATCTTCAACTGCATTTGACAATTTCAACATTCAGAACCGGAAGCGGTTTGCGGCCCAATTGTTCCCGGACTATGTGTCCTGA 2091 48.78 MMATYFHGNSDQIQAADHGGLQTLVLMNHGYVPYPDTPPPPAQPPTNLVFLNPPPPLTNSLPPHAHFSHAPPSHAQQFVTFPLPSTTSNTTTTTTSPSSQYDVSVSALHGSFIPHVQYNLWNPVGVDPSTASRETPRAQQGLSLSLSSEHPDAGYGSFQTDQRHEVLPSSQSQAQQAISGRSPNSSASGTTVNIGARNNMQRVLLSSRYMRATQELLEEVVSVGNNGVHTMESLKKGGSSLQQMKLTGESSVGGSGDGSIGSEATTEKHGNSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVTSAFEQVAGTGSARTYTSLALLTISKQFRCLKDTITSQIRAANKRLGEEESLGKKEGSRLKYVDHHLRQQRALQKLGMIQQNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGSEGGNKRMNKTNANNNEDSTISKSASTLQEKSCAAAESQSQPPTSPNAVLSPVRGNVRNQSGFITLIGSSELDGITQGSPKKLRDSGQEHNNNSNEHVFMNYSNENQQSRDGYSFMGGFGQYPIGEIVRFEADQFTSRFSSGNGVSLTLGLPHGENLSLSAAHQTFLPPNQSIHLGRREEMEEQNEFGAISSSTTVPHSSSTAFDNFNIQNRKRFAAQLFPDYVS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 763964 767667 - Conep03aG0014100.1 Cone3ag0138 433597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0138 696 Coils Coil 279 299 - -
Cone3ag0138 696 MobiDBLite consensus disorder prediction 79 100 - -
Cone3ag0138 696 SUPERFAMILY Homeodomain-like 395 460 IPR009057 -
Cone3ag0138 696 MobiDBLite consensus disorder prediction 162 194 - -
Cone3ag0138 696 MobiDBLite consensus disorder prediction 466 525 - -
Cone3ag0138 696 FunFam BEL1-like homeodomain protein 9 397 459 - -
Cone3ag0138 696 MobiDBLite consensus disorder prediction 545 565 - -
Cone3ag0138 696 MobiDBLite consensus disorder prediction 473 525 - -
Cone3ag0138 696 MobiDBLite consensus disorder prediction 129 155 - -
Cone3ag0138 696 ProSiteProfiles 'Homeobox' domain profile. 391 454 IPR001356 GO:0003677(InterPro)
Cone3ag0138 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 153 496 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone3ag0138 696 MobiDBLite consensus disorder prediction 247 276 - -
Cone3ag0138 696 MobiDBLite consensus disorder prediction 247 271 - -
Cone3ag0138 696 SMART HOX_1 394 458 IPR001356 GO:0003677(InterPro)
Cone3ag0138 696 MobiDBLite consensus disorder prediction 129 194 - -
Cone3ag0138 696 Gene3D - 388 468 - -
Cone3ag0138 696 CDD homeodomain 394 455 IPR001356 GO:0003677(InterPro)
Cone3ag0138 696 SMART prehox3 198 347 IPR006563 -
Cone3ag0138 696 Pfam Homeobox KN domain 411 450 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0138 696 Pfam Associated with HOX 203 346 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1357 Cone-Chr19:9008974 Cone3ag0138 Cone-Chr3:763964 9.19E-65 dispersed
Cone20ag0264 Cone-Chr20:1178108 Cone3ag0138 Cone-Chr3:763964 2.25E-47 dispersed
Cone3ag0138 Cone-Chr3:763964 Cone8ag1218 Cone-Chr8:10314758 5.97E-86 dispersed
Cone10ag0125 Cone-Chr10:633452 Cone3ag0138 Cone-Chr3:763964 0 wgd
Cone13ag0468 Cone-Chr13:5121282 Cone3ag0138 Cone-Chr3:763964 2.54E-216 wgd
Cone19ag0426 Cone-Chr19:3526526 Cone3ag0138 Cone-Chr3:763964 5.51E-217 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45762 PF03018 Dirigent 2.10E-35 CL0650 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0138 - - - 0.0