Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0151 ATGACCGACGGTGCTCAAGCTCCAAGCCACCAGGAGCCACGGGCGCCAAGCGGTGGTCAGATCGCACTGCCATTAAAGCGGCATTTGTCATTTACGTCGATGAAGCCGCCATTCATTCCTCTTGACGATTATCATCATTTTAGCGGTGGTGTTCCAAGATCTGCCGATCAAGAAGCTGAAGCTATCGTTGTTAGATCCCCTCAATTAAAGCAGAAAAGTGCAACAGACAGCAATGAGGTTGAATCCAGTGAATGGACTAGCAGTCCTAGGTTTACTAAAGTTGTTAATAGCCCCCTCCACACGCCTGTATCTGCAAAAGGGGGAAGGACTTACTATAAGTCAAAGGCTTCAAAGGGCAATAGATCTGGACCTCAAACACCTGTCTCAAATGCGGGTTCCCCTCTTACTCCAGCTGGAAGCTGTCGATATGACAGTTCACTAGGCCTCTTGACTAAAAAGTTCATCAGTTTAATTAAGCATGCAGAGGATGGTATTCTTGATTTAAACAGGGCTGCAGAGACTTTGGAGGTACAAAAGAGGCGGATATATGACATAACAAATGTCTTGGAAGGCATAGATCTCATTGAAAAGACACTCAAGAACAGAATCCGATGGAAGGGAGTCAATGCTTCAGGGCAAGGGAATATGGATGCTGACATCTCTCTATTACAGGCTGAAATTGAAAACATTTCCTTCGAAGAGCGGGGATTAGATGATAGGATAAGAGAATTACATGAAAGACTGAGGGGTATGAGTGAAGATGAAAACAACAAAAAATGGCTTTTTCTAACAGAAGAAGACATTAAAAGTGTACCCTACTTTCAGAATGAAACCTTGATAGCAGTTAAAGCTCCTCATGGAACTACTCTAGAAGTCCCGGATCCTGACGATGCTGCTGATTATCCTCAGAGGCGATATCGGATAATCCTCAGAAGCACGATGGGTCCAATCGATGTTTATCTTGTTAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATGTTGTTGAACTCCCAAAGGGGGTCCCACATGCTTCAAGTTCTGGATCAAATGAACACCCAGTGACAGAAGTGGTCCCCATGGAGAGTAGTATTAGGAAGGACTTCAGCTCACAGGCACATCATTTAGACCAAAGATCCTCTGATATCAATGATTCACAGGACTATCCTGGGGGAATGATGAAGATTGTTCCTTCAGAAGTGGATAATGATGCAGATTACTGGCTTGTATCGGATGCTGGCGTTAGCATTACAGACATGTGGAGAACAGACTCAGCTGTGTGGAATGAATCAGATATTCTCAATACAGACTTTGGGTTATCTGATCCAAGTTCTCCAAAGCCACAAACTCCACCCTCCGCAACTGTGGCAGTGCCATCATCTTCTTTTAACTTCATTAACAAAGGCTAA 1407 43.99 MTDGAQAPSHQEPRAPSGGQIALPLKRHLSFTSMKPPFIPLDDYHHFSGGVPRSADQEAEAIVVRSPQLKQKSATDSNEVESSEWTSSPRFTKVVNSPLHTPVSAKGGRTYYKSKASKGNRSGPQTPVSNAGSPLTPAGSCRYDSSLGLLTKKFISLIKHAEDGILDLNRAAETLEVQKRRIYDITNVLEGIDLIEKTLKNRIRWKGVNASGQGNMDADISLLQAEIENISFEERGLDDRIRELHERLRGMSEDENNKKWLFLTEEDIKSVPYFQNETLIAVKAPHGTTLEVPDPDDAADYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNVVELPKGVPHASSSGSNEHPVTEVVPMESSIRKDFSSQAHHLDQRSSDINDSQDYPGGMMKIVPSEVDNDADYWLVSDAGVSITDMWRTDSAVWNESDILNTDFGLSDPSSPKPQTPPSATVAVPSSSFNFINKG 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 841787 845427 + Conep03aG0015400.1 Cone3ag0151 433610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0151 468 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Cone3ag0151 468 SUPERFAMILY Winged helix DNA-binding domain 142 205 IPR036390 -
Cone3ag0151 468 Coils Coil 158 178 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 365 389 - -
Cone3ag0151 468 Gene3D - 136 210 IPR036388 -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 438 468 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 115 137 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 367 381 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 453 468 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 1 20 - -
Cone3ag0151 468 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone3ag0151 468 CDD E2F_DD 220 324 IPR032198 GO:0046983(InterPro)
Cone3ag0151 468 MobiDBLite consensus disorder prediction 68 99 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 64 137 - -
Cone3ag0151 468 Gene3D - 214 324 - -
Cone3ag0151 468 PANTHER TRANSCRIPTION FACTOR E2F 34 422 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone3ag0151 468 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone3ag0151 468 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983(InterPro)
Cone3ag0151 468 FunFam E2F transcription factor 1 136 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0555 Cone-Chr1:5528938 Cone3ag0151 Cone-Chr3:841787 1.01E-175 dispersed
Cone10ag0135 Cone-Chr10:701793 Cone3ag0151 Cone-Chr3:841787 1.15E-288 wgd
Cone3ag0151 Cone-Chr3:841787 Cone5ag1327 Cone-Chr5:7825728 7.47E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45763 PF07993 NAD_binding_4 1.90E-83 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0151 K06620 - mdm:103449517 619.772