Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0151 ATGACCGACGGTGCTCAAGCTCCAAGCCACCAGGAGCCACGGGCGCCAAGCGGTGGTCAGATCGCACTGCCATTAAAGCGGCATTTGTCATTTACGTCGATGAAGCCGCCATTCATTCCTCTTGACGATTATCATCATTTTAGCGGTGGTGTTCCAAGATCTGCCGATCAAGAAGCTGAAGCTATCGTTGTTAGATCCCCTCAATTAAAGCAGAAAAGTGCAACAGACAGCAATGAGGTTGAATCCAGTGAATGGACTAGCAGTCCTAGGTTTACTAAAGTTGTTAATAGCCCCCTCCACACGCCTGTATCTGCAAAAGGGGGAAGGACTTACTATAAGTCAAAGGCTTCAAAGGGCAATAGATCTGGACCTCAAACACCTGTCTCAAATGCGGGTTCCCCTCTTACTCCAGCTGGAAGCTGTCGATATGACAGTTCACTAGGCCTCTTGACTAAAAAGTTCATCAGTTTAATTAAGCATGCAGAGGATGGTATTCTTGATTTAAACAGGGCTGCAGAGACTTTGGAGGTACAAAAGAGGCGGATATATGACATAACAAATGTCTTGGAAGGCATAGATCTCATTGAAAAGACACTCAAGAACAGAATCCGATGGAAGGGAGTCAATGCTTCAGGGCAAGGGAATATGGATGCTGACATCTCTCTATTACAGGCTGAAATTGAAAACATTTCCTTCGAAGAGCGGGGATTAGATGATAGGATAAGAGAATTACATGAAAGACTGAGGGGTATGAGTGAAGATGAAAACAACAAAAAATGGCTTTTTCTAACAGAAGAAGACATTAAAAGTGTACCCTACTTTCAGAATGAAACCTTGATAGCAGTTAAAGCTCCTCATGGAACTACTCTAGAAGTCCCGGATCCTGACGATGCTGCTGATTATCCTCAGAGGCGATATCGGATAATCCTCAGAAGCACGATGGGTCCAATCGATGTTTATCTTGTTAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATGTTGTTGAACTCCCAAAGGGGGTCCCACATGCTTCAAGTTCTGGATCAAATGAACACCCAGTGACAGAAGTGGTCCCCATGGAGAGTAGTATTAGGAAGGACTTCAGCTCACAGGCACATCATTTAGACCAAAGATCCTCTGATATCAATGATTCACAGGACTATCCTGGGGGAATGATGAAGATTGTTCCTTCAGAAGTGGATAATGATGCAGATTACTGGCTTGTATCGGATGCTGGCGTTAGCATTACAGACATGTGGAGAACAGACTCAGCTGTGTGGAATGAATCAGATATTCTCAATACAGACTTTGGGTTATCTGATCCAAGTTCTCCAAAGCCACAAACTCCACCCTCCGCAACTGTGGCAGTGCCATCATCTTCTTTTAACTTCATTAACAAAGGCTAA 1407 43.99 MTDGAQAPSHQEPRAPSGGQIALPLKRHLSFTSMKPPFIPLDDYHHFSGGVPRSADQEAEAIVVRSPQLKQKSATDSNEVESSEWTSSPRFTKVVNSPLHTPVSAKGGRTYYKSKASKGNRSGPQTPVSNAGSPLTPAGSCRYDSSLGLLTKKFISLIKHAEDGILDLNRAAETLEVQKRRIYDITNVLEGIDLIEKTLKNRIRWKGVNASGQGNMDADISLLQAEIENISFEERGLDDRIRELHERLRGMSEDENNKKWLFLTEEDIKSVPYFQNETLIAVKAPHGTTLEVPDPDDAADYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNVVELPKGVPHASSSGSNEHPVTEVVPMESSIRKDFSSQAHHLDQRSSDINDSQDYPGGMMKIVPSEVDNDADYWLVSDAGVSITDMWRTDSAVWNESDILNTDFGLSDPSSPKPQTPPSATVAVPSSSFNFINKG 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 841787 845427 + Conep03aG0015400.1 Cone3ag0151 433610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0151 468 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Cone3ag0151 468 SUPERFAMILY Winged helix DNA-binding domain 142 205 IPR036390 -
Cone3ag0151 468 Coils Coil 158 178 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 365 389 - -
Cone3ag0151 468 Gene3D - 136 210 IPR036388 -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 438 468 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 115 137 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 367 381 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 453 468 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 1 20 - -
Cone3ag0151 468 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone3ag0151 468 CDD E2F_DD 220 324 IPR032198 GO:0046983(InterPro)
Cone3ag0151 468 MobiDBLite consensus disorder prediction 68 99 - -
Cone3ag0151 468 MobiDBLite consensus disorder prediction 64 137 - -
Cone3ag0151 468 Gene3D - 214 324 - -
Cone3ag0151 468 PANTHER TRANSCRIPTION FACTOR E2F 34 422 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone3ag0151 468 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone3ag0151 468 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983(InterPro)
Cone3ag0151 468 FunFam E2F transcription factor 1 136 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0151 K06620 - - mdm:103449517 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0555 Cone-Chr1:5528938 Cone3ag0151 Cone-Chr3:841787 1.01E-175 dispersed
Cone10ag0135 Cone-Chr10:701793 Cone3ag0151 Cone-Chr3:841787 1.15E-288 wgd
Cone3ag0151 Cone-Chr3:841787 Cone5ag1327 Cone-Chr5:7825728 7.47E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45763 PF07993 NAD_binding_4 1.90E-83 CL0063 Cone TF