Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0170 ATGTGGGCAAATGCAGAAGGAGGCCCTCCCGAGGTGACTCTAGAAACTTCTATGGGAGCTTTCACAGTTGAGCTGTACTTCAAACACGCACCGAGAACTTGCAGGAACTTCATCGAACTCTCTCGCAGAGGCTATTACGACAATGTTAAGTTCCACAGAATCATCAAGGATTTTATTGTGCAAGGTGGAGATCCTACAGGGACAGGAAGAGGTGGAGAATCCATTTACGGGAAGAAGTTTGAGGATGAAATAAAGCCGGAGTTGAAGCACACAGGGGCTGGGATTTTATCAATGGCAAATGCCGGTCCGAATACGAACGGAAGCCAGTTCTTTATCACCCTTGCACCTTGTCCGTCTCTGGATGGAAAACACACTGTTTTCGGAAGAGTTTGCTGGGGAATGGAGATTATCAAAAGGCTTGGCAGTGTCCAAACCGATAACAATGATAGGCCCATACATGATGTTAAGATACTGCGAACATCAGTGAAAGACTAA 495 46.06 MWANAEGGPPEVTLETSMGAFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTVFGRVCWGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD 164
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 915157 917389 + Conep03aG0017300.1 Cone3ag0170 433629
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0170 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755(InterPro)
Cone3ag0170 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Cone3ag0170 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag0170 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag0170 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Cone3ag0170 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 160 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Cone3ag0170 164 Gene3D - 3 164 IPR029000 -
Cone3ag0170 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cone3ag0170 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag0170 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag0170 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag0170 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag0170 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1362 Cone-Chr11:9917404 Cone3ag0170 Cone-Chr3:915157 1.48E-52 dispersed
Cone18ag0216 Cone-Chr18:1066762 Cone3ag0170 Cone-Chr3:915157 3.31E-51 dispersed
Cone20ag1007 Cone-Chr20:7061604 Cone3ag0170 Cone-Chr3:915157 2.97E-22 dispersed
Cone3ag0170 Cone-Chr3:915157 Cone6ag1459 Cone-Chr6:11655955 4.97E-51 dispersed
Cone10ag0151 Cone-Chr10:758104 Cone3ag0170 Cone-Chr3:915157 6.08E-35 wgd
Cone13ag0425 Cone-Chr13:3905146 Cone3ag0170 Cone-Chr3:915157 1.54E-16 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0170 K12733 - csv:101222111 325.479