Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0199 | ATGGAAGAGAAGGAGAGCACTTTTTCAGGCTCGTCGCCTGGAAACTCCGAAACGGAGTCACCACCACCTATAACGAGCAGCATGGAGGCGGCGGCGGCGGCCGAGAGGAGCTTCGTTCCCGGAATACAAGCGATATCAATGACTGCGACGCCGGGAAGCGGCGGAGGTGGGACAGGGACAGGGACAGGGACAGGAAGTAGTGGTGATTTGGTTGGGAGAAAGAGGAGGGGGAGGCCCAGAAAGTACGATTCAGATGGAAATTTGAGAGTTGGTTATTATAATAATAATAAACAGCAATTAGGAGCAGGGGGCCCACCACCACCACCTGGGTTTTCTCTATCGACTTCTTCTCCTCCGTCTGATTTTTCTTCTATGTCCAAAAGGGGAAGAGGTAGGCTATCTGGAAGTGGTAATTGGCAGCTTATTGCTTCTTTAGGAGAAATCTTTGCCAATACGGCAGGCGGGGACTTCACGCCGCATGTGGTTACTGTTAACACCGGCGAGGATGTTGCTGGGAAAGTTATATCATTCTCCCAGAAGGGTAACCGTGGAGTTTGCGTTCTCTCAGCCAATGGAGCCGTTTCCAACGTCACCATTCGCCAGCCAGGCTCTTCCGGTGGCATCTTGACATACGAGGGTCGGTTTGAGATACTGTCATTATCCGGGTCGTTTACGGTTATAGAAAATAGCGGGATGAGAAGTAGAACTGGAGGATTAAGTGTCTCTTTAGCTGGTCCAGATGGTCGTGTCATAGGTGGTGGTGTTGCTGGTTTACTCTTGGCTGCTAGCCCTATCCAAATTGTGGTCGGAAGTTTCATGCCAAATGGGTACAAGGCCCATAAAAGGAAGTACAACCGCGAGCAACCAGTTTCTACTCCACCTCTTTCTCTTGCAAGTGCTGCAGAGGCAGTGACAGCAGCAACTCCTATCTCTCAGGCAAACCCAGATAGTCGTTTATGGCCTGGCCCAACCAATAATGGAGGAGGAGCAGCAGCAGCTGCTGATGATAGCGACAAACAGAACAGCCTCAATGCTCTTCCAGCCAACAATGCTGCCTCATCGTGGATTGGGCCTGAGCCGTTGTCGGGTCAGAGACCGTCGCCTGATATCAATGTGTCTATATCTTGTGGTGAATAA | 1137 | 50.92 | MEEKESTFSGSSPGNSETESPPPITSSMEAAAAAERSFVPGIQAISMTATPGSGGGGTGTGTGTGSSGDLVGRKRRGRPRKYDSDGNLRVGYYNNNKQQLGAGGPPPPPGFSLSTSSPPSDFSSMSKRGRGRLSGSGNWQLIASLGEIFANTAGGDFTPHVVTVNTGEDVAGKVISFSQKGNRGVCVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVIENSGMRSRTGGLSVSLAGPDGRVIGGGVAGLLLAASPIQIVVGSFMPNGYKAHKRKYNREQPVSTPPLSLASAAEAVTAATPISQANPDSRLWPGPTNNGGGAAAAADDSDKQNSLNALPANNAASSWIGPEPLSGQRPSPDINVSISCGE | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1032642 | 1034914 | + | Conep03aG0020400.1 | Cone3ag0199 | 433658 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0199 | 378 | MobiDBLite | consensus disorder prediction | 115 | 133 | - | - | |
| Cone3ag0199 | 378 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
| Cone3ag0199 | 378 | MobiDBLite | consensus disorder prediction | 43 | 67 | - | - | |
| Cone3ag0199 | 378 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 156 | 280 | - | - | |
| Cone3ag0199 | 378 | MobiDBLite | consensus disorder prediction | 1 | 133 | - | - | |
| Cone3ag0199 | 378 | MobiDBLite | consensus disorder prediction | 337 | 357 | - | - | |
| Cone3ag0199 | 378 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 159 | 272 | IPR005175 | - | |
| Cone3ag0199 | 378 | CDD | DUF296 | 158 | 272 | IPR005175 | - | |
| Cone3ag0199 | 378 | ProSiteProfiles | PPC domain profile profile. | 154 | 296 | IPR005175 | - | |
| Cone3ag0199 | 378 | MobiDBLite | consensus disorder prediction | 309 | 378 | - | - | |
| Cone3ag0199 | 378 | Gene3D | - | 159 | 289 | - | - | |
| Cone3ag0199 | 378 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 33 | 326 | IPR039605 | GO:0003680(InterPro) | |
| Cone3ag0199 | 378 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag0199 | Cone-Chr3:1032642 | Cone9ag0724 | Cone-Chr9:3455326 | 1.94E-61 | dispersed | |
| Cone10ag0188 | Cone-Chr10:922961 | Cone3ag0199 | Cone-Chr3:1032642 | 3.85E-185 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0199 | - | - | - | 0.0 |