Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0203 ATGCCTTACCGGAGATCGAACTACAATCTCCTAAGTCAATCACCTGACGACGTGGCGGGAGCGGGTACTGCGACGTCGTTTTACGAGTCCCTGTCTGGAGAGGGAAAGAGCAGTAAGGGAAAGACGGAGAGAGGTTTTGATTGGGAAACAGGTGAGGGTGATCATAAGGTGAACCAGCCGGGGAATCGGATCGGAAACCTCTTCTCGACTAGTGGTTTACAGAGGCAGTCGAGTGGAAGCAGCTTCGGCGAAAGCTCGATTTCCGGGGAGTATTATGCCTCGATGCTCTCTGGTTATATGCAAGACGATGTGGTCAGAGTCGGAGGAGGTGAGTTGAGAGTCAAAGGATTGGAGTTTTCCGGAGAACAGGGAAGTTCGTCGGGGAAGAGCTGGGCCCAGCAGACGGAAGAGAGTTATCAGCTGCAGTTGGCTTTGGCGTTACGACTTTCTTCTGTCGCTGCCAGTACGAATGATCCTAATTTTTTGGATCCGATGCCCGATGAAGCGTCCTCAAGGACTTCCTCAATCTCGGCTGAGGCCTTGTCTCATCGATTTTGGGTAAATGGCTGCCTGTCATACTCTGATAAAGTTCCTGACAGATTTTATCTAATTCATGGGATGGATCCATATGTCTGGTCTATGTGCACTGATCTGCAAGAAAATGGCCGTCTTCCATCAATCGAGTCACTGAAGTCCATTGATCCTCGCTTTGATTCTTCAGTTGAGGTGGTTTTGTTTGATCGATGTAGTGATGCCTTCTTAATGGAACTTCAAAATATGGCCCACAACATTTCTTGTAGCTGTGTGACAAAAGAAGAGGTCGTGGATCAGCTCGCAAAACTCGTATGCAGCCACATGGGAGGCTCATTTTCAACAGGAGAAGACAACTTGGTTTCCTACTGGATGGAATGCAGTGATGCCCTAAAACATCGTTTAGGATCTGTCATCCTTCCCATTGGCAGCCTATCAGTCGGCCTTTGCAGACATCGTGCTCTATTGTTCAAAGTGCTAGCAGACACAATTGATTTACCATGTCGTATAGCGAAGGGCTGTAAGTATTGCACGAGAACCGATGCTTCCTCTTGTCTTGTCCGATTTGGGATTGACAGGGAGTTTATGATTGATTTGATTTCAAAGCCAGGTTGCTTATGCCAACCTGATTCTTTGCTCAATGGTGCATCATCTATCTCAATTTCTTCACCACTGCGCTTTCCACGTCCTAAAGCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAGTACTTTTTGGATTGTCAATCGCTTAACATCGTATTTGATGAAGTTTCCACAGGAAATGTTTTTGATAGAGAAAATGCTGCATTACCCATGCATATGCAGTTTGATAGGAAGGGAATAGACCGAAACGGAGTAGTGCCTACTGGTAGCACGGATGTAAGTTCTCAGTTGCTGTATCCAATGGTTACTCAATCAAGTACCAATAATAGAGAGTCCCAGCCATTCAAGACATGTGATACTTCAAATGATGTTATAAACTCAATAACCATGGTCAAAGATCCAGTACCCACAGAGCATATCTCACACAATGTTCAACCACTTATAGCAGTGTCTCATCGAAGAATGGGTTCTGCTATGGACTCAAGATTTTTCGAGGGAGATGAATCAGTCCCTAGTGAAGCAAGGAAGGATCTTCCCCATGATGTAGAGGATTTAGACATTCCATGGAGTGATCTTCAATTGAAAGAAATAATTGGATCAGGTTCATTTGGAACTGTCCATCGTGCTGACTGGAATGACTCGGATGTTGCTGTGAAGATTCTCATGGAACAGGACTTCCACCCTCAACGCATTAACGAATTTCTGAGGGAGGTTGCCATAATGAAATGCCTTAGACACCCAAACATTGTTCTCTTTATGGGTGTGGTCACACAGCCTCCAAACTTGTCAATTGTCACGGAATACTTATCAAGAGGTAGCTTGTACAGGCTTTTGCATAAAGGTGGAGGGAGGGAGATGTTAGATGAGAGGCGTCGATTAAATATGGCACTTGATGTGGCAAAGGGAATGAATTATCTTCACAGACGTAATCCTCCGATTGTTCACCGTGATTTGAAATCTCCAAATCTTTTGGTCGACAAAAAGTTTACAGTAAAGGTCTGTGACTTTGGTCTTTCCCGGTTAATGGCAAACACATTTCTCTCATCAAAGTCAGCTGCTGGGACTCCTGAATGGATGGCACCAGAAGTCCTTCGTGATGAGCCATCAAATGAAAAGTCAGATGTTTATAGTTTTGGTGTAATTTTGTGGGAACTTGCAACATTACAACAACCGTGGGGTAACTTAAACCCAGCACAGGTTGTGGCAGCTGTAGGTTTTGAGGGAAAAAGGCTTGAGATCCCACACGATTTAAATCCTCAAGTGGCTTCCATCATAGAAGCCTGCTGGGCAGATGAGCCCTGGAAACGCCCATCCTTTTCCACTATAATGGAATGTTTGAGGCCATTGATCAAACAACCCACCACATCCCGTCCAAGTCGTCCAGATGTGCCCTCAATTACCTGA 2547 45.23 MPYRRSNYNLLSQSPDDVAGAGTATSFYESLSGEGKSSKGKTERGFDWETGEGDHKVNQPGNRIGNLFSTSGLQRQSSGSSFGESSISGEYYASMLSGYMQDDVVRVGGGELRVKGLEFSGEQGSSSGKSWAQQTEESYQLQLALALRLSSVAASTNDPNFLDPMPDEASSRTSSISAEALSHRFWVNGCLSYSDKVPDRFYLIHGMDPYVWSMCTDLQENGRLPSIESLKSIDPRFDSSVEVVLFDRCSDAFLMELQNMAHNISCSCVTKEEVVDQLAKLVCSHMGGSFSTGEDNLVSYWMECSDALKHRLGSVILPIGSLSVGLCRHRALLFKVLADTIDLPCRIAKGCKYCTRTDASSCLVRFGIDREFMIDLISKPGCLCQPDSLLNGASSISISSPLRFPRPKAAEPTIDFRSLAKQYFLDCQSLNIVFDEVSTGNVFDRENAALPMHMQFDRKGIDRNGVVPTGSTDVSSQLLYPMVTQSSTNNRESQPFKTCDTSNDVINSITMVKDPVPTEHISHNVQPLIAVSHRRMGSAMDSRFFEGDESVPSEARKDLPHDVEDLDIPWSDLQLKEIIGSGSFGTVHRADWNDSDVAVKILMEQDFHPQRINEFLREVAIMKCLRHPNIVLFMGVVTQPPNLSIVTEYLSRGSLYRLLHKGGGREMLDERRRLNMALDVAKGMNYLHRRNPPIVHRDLKSPNLLVDKKFTVKVCDFGLSRLMANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFEGKRLEIPHDLNPQVASIIEACWADEPWKRPSFSTIMECLRPLIKQPTTSRPSRPDVPSIT 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1052705 1059067 + Conep03aG0020900.1 Cone3ag0203 433662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0203 848 PRINTS Tyrosine kinase catalytic domain signature 647 660 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 PRINTS Tyrosine kinase catalytic domain signature 798 820 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 PRINTS Tyrosine kinase catalytic domain signature 735 745 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 PRINTS Tyrosine kinase catalytic domain signature 754 776 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 PRINTS Tyrosine kinase catalytic domain signature 688 706 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 MobiDBLite consensus disorder prediction 62 85 - -
Cone3ag0203 848 FunFam Serine/threonine-protein kinase CTR1 652 837 - -
Cone3ag0203 848 ProSiteProfiles Protein kinase domain profile. 573 831 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 SUPERFAMILY Protein kinase-like (PK-like) 559 827 IPR011009 -
Cone3ag0203 848 MobiDBLite consensus disorder prediction 36 56 - -
Cone3ag0203 848 Gene3D Phosphorylase Kinase; domain 1 566 651 - -
Cone3ag0203 848 PANTHER SERINE-THREONINE PROTEIN KINASE 89 830 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone3ag0203 848 CDD STKc_MAP3K-like 579 825 - -
Cone3ag0203 848 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Cone3ag0203 848 MobiDBLite consensus disorder prediction 1 35 - -
Cone3ag0203 848 MobiDBLite consensus disorder prediction 1 85 - -
Cone3ag0203 848 Pfam Protein tyrosine and serine/threonine kinase 573 827 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 SMART serkin_6 573 831 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 Gene3D Transferase(Phosphotransferase) domain 1 652 839 - -
Cone3ag0203 848 FunFam Serine/threonine-protein kinase isoform 1 563 651 - -
Cone3ag0203 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0203 848 ProSitePatterns Protein kinases ATP-binding region signature. 579 600 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0203 Cone-Chr3:1052705 Cone7ag0865 Cone-Chr7:6610121 5.99E-198 dispersed
Cone10ag0186 Cone-Chr10:905888 Cone3ag0203 Cone-Chr3:1052705 0 wgd
Cone13ag1213 Cone-Chr13:9357152 Cone3ag0203 Cone-Chr3:1052705 0 wgd
Cone19ag1198 Cone-Chr19:8377949 Cone3ag0203 Cone-Chr3:1052705 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82651 PF02861 Clp_N 0.0066 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0203 K14510 - cit:102612580 1126.31