Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0206 ATGTACTCTACACAATCAACCCCCGCTTCAACCATAATTCCAGCTAATTATAGGGGAGTAAGGCGGCGGAGCAACGGAAAATGGGTGTCAGAAATCCGTGAGCCCAAAAAGCCCAATAGAATATGGTTAGGCACCTTTTCGACCCCCGAAATGGCTGCGGTGGCCTATGATGTGGCGGCACGAGCATTGAAGGGCAATGATGCCGAGCTTAACTTCCCAAACTTAGCACCTTCATTGCCCGTGCCGGAATCCACGTCATCACGTGATATTCAGGCAGCCGCCACCTCTGCTGCCGCTGCTATGGGGTTAGCTAAGGGTGTTAGTTATAGTAATGATCCGGTTAGGGCGGGGCTGCTGATGATAAGTGAGGAGGTTGAATCATTAATGGATGGAGAAAATAATCATATTGATGAGTATATTGATGAGGACTTGATTTTTGATATGCCGAATGTGATAATGAATATGGCAGAGGGAATGCTTCTTTCTCCTCCTCGCTTCAATGAGTATGGCTGTGCTGAAGATCATGATGCAGGTCATAGCCTTTGGAAATTCACTTGA 558 47.13 MYSTQSTPASTIIPANYRGVRRRSNGKWVSEIREPKKPNRIWLGTFSTPEMAAVAYDVAARALKGNDAELNFPNLAPSLPVPESTSSRDIQAAATSAAAAMGLAKGVSYSNDPVRAGLLMISEEVESLMDGENNHIDEYIDEDLIFDMPNVIMNMAEGMLLSPPRFNEYGCAEDHDAGHSLWKFT 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1091642 1092199 + Conep03aG0021200.1 Cone3ag0206 433665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0206 185 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0206 185 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0206 185 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0206 185 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Cone3ag0206 185 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677(InterPro)
Cone3ag0206 185 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0206 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 152 IPR051032 -
Cone3ag0206 185 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0206 185 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0206 185 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1192 Cone-Chr19:8341322 Cone3ag0206 Cone-Chr3:1091642 7.34E-54 dispersed
Cone3ag0206 Cone-Chr3:1091642 Cone6ag0748 Cone-Chr6:3795049 8.05E-44 dispersed
Cone3ag0206 Cone-Chr3:1091642 Cone13ag1205 Cone-Chr13:9320274 1.38E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45766 PF14543 TAXi_N 3.40E-25 CL0129 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0206 - - - 0.0