Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0209 ATGGCTTCCTTTTCTGCAACTAGTGAAATTGTGGAAGCAAGTGAAGAAACATATCCGGGTCAACCTTCCATGGAGTCATATAGAATGAGATACGGATCAGCTGTCAAAGAAGGGAAGCTTCCAATGGTAGGGTACAATAATTTTCTTGAGGAAGATCTTAATCACCTTTTTGAGGCCATCAATCTTAAAGACTTTTCGAAGAGTGAAGGGGGGCTTTCCCAACCACGGACAAGCCCTATGAGGAAAAGTGCATTAAAAAGGCCAATTGCATTGCCTCGTTCACCGGGAATTGGGATTTCTGAACAGGTTAATCTGAAACAAGCATTAAGAGAACTCTGCCTTTCAAAGGCATCAGAAATGGCAGCTACTAAACGGTTATCGAAATCAAGACCTTCAGGTGCATCAGAAGCTGGACGTATTAAGACGTTGTACAATTCTGTTGTGATTGAAGCAAGTCGGTCTAGTACTTCACTAGATAAAGAGGGCAAGGGGAGTATGGTTGAAATATCCCTAGTTCCAGAGGACAGCTTATCCAAACCCGTGAAAAATGATAACCTTAAAATACACACAGTCAAATCCCCGACCAGAAGTCCTCGTTTGTCCCCCCGATCAGTCGTTATGACATCACAAAGCTCTAACGAGATTACAGAAGAGGAAAGCGATATTGTTCACAGACCAAAGAAACTCGGGGCTCAAACATTGAAGGAAGAACTGGCACGGAAAGAGAAAGATGCATCCCCTCCTTCTGCTTCCTCTTCTAATACTATTCGCAATGTATTAGTGCAGGATGAGGCTACCCCTGCCTCAAGCAAGTTAGCAAATAAAGCATCATCATCAAAGCCAGGTAGGAAAGGCAGGTTGCAAACTGTAGCTTCATCGGTCAGTGGAAACAGGGTTAGCAGATTCTCGAGAAATACTGCTAGGACAGTTAAACCAGTTATCAGGAACAAAGCACTTGCAAAGAAGAAAGTAAAACAGGAATCAACCATCGATATCTGTTCTTCTAGCACACAGAATGTAGCGACTGAAACAGTGAATCCTAGTGCAAAACCTTTGATATGTGAGAGATGCCAGTGCGCAATAAAGAGTGCAGGTAATGAATCAAAAGAAATTTATTCAGAATCAAAATTTAACAGTGTTGGGGCCGAAGTAAGCTTGATGAATAATGGGAAGTCTGGTTCAGGCAAAGATGCTGTGCTGAAAGGAAAAAGGAACATGAAAATGCAAGAAAAGGGTGAGTTTTCCCAAAGCTCAAAAAGCAGTCACGGGGAGTACAGCAGCAGCACTACAAGTATCAGTGAGGAAAGCAATGCAAGTAGGTCTAGCTGTGGGAACAGACCCCATATGTCGAAAGATGTGAGGTGGGAAGCAATCCGTCAGGTTCGGAGGCAGAGTGGGACCCTCAGGTTGACCCACTTCAATCTGTTGAAGAAGCTGGGTTGTGGAGATATTGGAACTGTATATCTGGCCGAATTAGTTGGTACAAATTGCGTATTTGCTATAAAAGTGATGGACAATGAGTTCTTAGCAAGGAGAAAGAAGATGCCAAGGGCTCAGACAGAGAGAGAAATACTTAGAATGCTTGACCATCCTTTTCTCCCTACGCTTTATTCTCAGTTTACATCGGATAACCTGTCTTGTCTTGTCATGGAGTATTGTCCGGGAGGAGACCTTCATGTCCTTAGGCAGAAGCAGCTTGGCAGGGTATTCTCTGAGCCAGCAGCAAGATTTTATGTAGCAGAAGTCCTCCTTGCTTTGGAGTACTTACACATGCTTGGAGTTGTTTATCGAGATTTGAAACCAGAGAACATTCTCGTACGAGAAGATGGTCACATTATGCTCACTGACTTTGACCTCTCACTCCGATGCACAGTCAATCCAACTCTCCTAAAATCTTCTTCATTCAACCTAGATCCAGTAAGAATATCCGGTCCGTGCACAGGATCCACTTGTGCCGAGCCCTTTTGCATTGAACCAGCCTGTCAAGTTCCGTGCTTCAGCCCGAGATTCTTACCTAACGCCACCAAAGCAAGAAAGTTAAAATCCGACCTTTCAATTCCAACGAGATCATTGCCCCAGCTGGTTGCGGAGCCCACTGAAGCTCGATCGAATTCCTTTGTCGGGACCCACGAGTACTTGGCCCCCGAAATCATTAAAGGAGAGGGTCACGGAGCAGCAGTTGATTGGTGGACATTTGGGGTGTTTCTTTACGAGCTTTTGTATGGGAAAACACCGTTCAAAGGCCCCAGTAACGACGAGACATTGGCCAATGTGGTTTTGCAGGGCCTGAAATTTCCGGACAGCCCACTTGTTAGTTTCCAGGCGAGGGACCTTATCCGAGGCCTGTTGGTGAAGGAGCCCGAGAATCGATTTGGGTCTGAGAAAGGTGCGGCTGAGATTAAACAGCATCCCTTTTTTGAAGGCTTGAACTGGGCCTTGATAAGGTGTGCTGTTCCACCAGATCTGCCTGATCAGTTCTGTGATTTTGATGTTACAAACTTTGCTGCTGCTCAGCAAAACTACAGCAAGTACTTGGATTACAAGGCTAACGGAGAACACGTAGAGTTCGAGTTGTTTTAG 2580 44.88 MASFSATSEIVEASEETYPGQPSMESYRMRYGSAVKEGKLPMVGYNNFLEEDLNHLFEAINLKDFSKSEGGLSQPRTSPMRKSALKRPIALPRSPGIGISEQVNLKQALRELCLSKASEMAATKRLSKSRPSGASEAGRIKTLYNSVVIEASRSSTSLDKEGKGSMVEISLVPEDSLSKPVKNDNLKIHTVKSPTRSPRLSPRSVVMTSQSSNEITEEESDIVHRPKKLGAQTLKEELARKEKDASPPSASSSNTIRNVLVQDEATPASSKLANKASSSKPGRKGRLQTVASSVSGNRVSRFSRNTARTVKPVIRNKALAKKKVKQESTIDICSSSTQNVATETVNPSAKPLICERCQCAIKSAGNESKEIYSESKFNSVGAEVSLMNNGKSGSGKDAVLKGKRNMKMQEKGEFSQSSKSSHGEYSSSTTSISEESNASRSSCGNRPHMSKDVRWEAIRQVRRQSGTLRLTHFNLLKKLGCGDIGTVYLAELVGTNCVFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYSQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNLDPVRISGPCTGSTCAEPFCIEPACQVPCFSPRFLPNATKARKLKSDLSIPTRSLPQLVAEPTEARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGPSNDETLANVVLQGLKFPDSPLVSFQARDLIRGLLVKEPENRFGSEKGAAEIKQHPFFEGLNWALIRCAVPPDLPDQFCDFDVTNFAAAQQNYSKYLDYKANGEHVEFELF 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1113014 1116602 - Conep03aG0021500.1 Cone3ag0209 433668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0209 859 MobiDBLite consensus disorder prediction 217 244 - -
Cone3ag0209 859 MobiDBLite consensus disorder prediction 178 296 - -
Cone3ag0209 859 PANTHER FLIPPASE KINASE 1-RELATED 306 830 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone3ag0209 859 FunFam serine/threonine-protein kinase D6PK-like 701 824 - -
Cone3ag0209 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0209 859 Gene3D Transferase(Phosphotransferase) domain 1 553 622 - -
Cone3ag0209 859 MobiDBLite consensus disorder prediction 246 296 - -
Cone3ag0209 859 MobiDBLite consensus disorder prediction 188 216 - -
Cone3ag0209 859 SUPERFAMILY Protein kinase-like (PK-like) 446 825 IPR011009 -
Cone3ag0209 859 FunFam serine/threonine-protein kinase D6PK-like 557 624 - -
Cone3ag0209 859 FunFam Serine/threonine-protein kinase D6PK-like 471 556 - -
Cone3ag0209 859 ProSiteProfiles Protein kinase domain profile. 473 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0209 859 Gene3D Phosphorylase Kinase; domain 1 471 552 - -
Cone3ag0209 859 Gene3D Phosphorylase Kinase; domain 1 825 838 - -
Cone3ag0209 859 SMART serkin_6 473 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0209 859 MobiDBLite consensus disorder prediction 1 25 - -
Cone3ag0209 859 MobiDBLite consensus disorder prediction 408 448 - -
Cone3ag0209 859 MobiDBLite consensus disorder prediction 411 446 - -
Cone3ag0209 859 Pfam Protein kinase domain 474 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0209 859 Pfam Protein kinase domain 703 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0209 859 CDD STKc_phototropin_like 471 824 - -
Cone3ag0209 859 Gene3D Transferase(Phosphotransferase) domain 1 701 824 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1361 Cone-Chr11:9912074 Cone3ag0209 Cone-Chr3:1113014 2.36E-224 dispersed
Cone13ag1200 Cone-Chr13:9287179 Cone3ag0209 Cone-Chr3:1113014 2.05E-290 dispersed
Cone18ag0217 Cone-Chr18:1076442 Cone3ag0209 Cone-Chr3:1113014 7.97E-231 dispersed
Cone19ag1184 Cone-Chr19:8299360 Cone3ag0209 Cone-Chr3:1113014 8.99E-293 dispersed
Cone3ag0209 Cone-Chr3:1113014 Cone5ag1793 Cone-Chr5:12725115 4.62E-179 dispersed
Cone10ag0177 Cone-Chr10:861393 Cone3ag0209 Cone-Chr3:1113014 0 wgd
Cone11ag1025 Cone-Chr11:8118512 Cone3ag0209 Cone-Chr3:1113014 7.87E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82652 PF16421 E2F_CC-MB 6.20E-31 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0209 - - - 0.0