Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0217 ATGGAGTCTCTTCTTTTCGTCCCAACACATTCATCAGCTCGACTCACTCCAAAACGCAGCGTTTCGGCCACCCCGCATTCTCCCTTCAGTGGGAACAAATTTCCAACGACCGCCACCATTACCATTAAAACCCGCCACATAAACCGTCGAATTTATAAGCCGTTTATTCCCTCCGCCTTTTCAAAACCGACGACCGACGTTCCGACATGCACTTCCGTTGTCACACGGGATAACACATTGCAGAAATCTCATTCTTCACCTCCTCCCCGCAAAAGAGTATTGTCAGATTCTCTACAGTACCCCCCTGGTTTCCTTGGCGGCCTACCGGACCGTACAGCTGTTGATTCTGATGATGATATGATTGGCGCTATGAGACAGTTGACGAATATACTGTCTTCTAAGGTGTATGACGTGGCAACTGAGTCTCCATTGCAGCTTGCGCCTAATCTGTCAGAGCGTTTCGGTGTTAATATTTGGCTCAAGAGGGAGGATTTGCAGCCCGTGTTCTCGTTCAAGCTCCGAGGAGCTTACAATATGATGGTAAAGCTTCCTAAAGAACAATTAGAAAGAGGAGTTATCTGCTCGTCTGCTGGAAATCATGCTCAAGGAGTTGCCTTTTCAGCCAAGAAACTCGGATGCGATGCTGTTATCGTTATGCCAGTAACTACTCCCGAAATCAAGTGGAAGTCTGTTGAGAGATTGGGTGCAAGAGTTGTTCTTGTTGGGGATACATATGAAGAGGCACAAGCATATGCTAAGAAACAAGGACAAGATGAAGGCCGTACGTTCATACCTCCTTTTGATCACCCAGATGTGATCATGGGGCAAGGGACGATCGGGATGGAAATTGGACGGCAAATGCAGGGCCCACTCCATGCGATATTTGTACCTGTTGGAGGTGGCGGGCTTATAGCCGGCATTGCGGCTTATGTCAAGAGAGTTTCTCCTCAGGTGAAGATTATTGGGGTGGAGCCGAGTGAAGCAAATGCAATGGCATTGTCGTTACATCATGGTGAAAGAGTGATTTTAGAAAATGTTGGAGCATTTACAGATGGGGTAGCCGTTAAAGAAGTAGGGAAAGAGACTTTTCGCTTATGCAAAGAGCTAGTAGATGGTATAGTTCTTGTAAACCGAGATGCTATATGTGCCTCTATAAAGGACATGTTTGAAGAGAAGAGGAGCATTTTAGAACCAGCAGGTGCTCTTTCTCTCGCTGGCGCAGAGGCATATTGCAAATATTATAGCCTCAAGGGAGAAAATGTTGTGGTCATAACAAGTGGGGCAAATATGAATTTCGATAAGTTGAGGATGGTTACTGAACTTGCTAATGTTGGTCGCAAACAAGAGGCTTTGTTTGCTGCTGTCATTCCAGAAGAGACCGGAAGCTTCAAACAGTTCTGTGAACTGGTTAGTCCTCTGAATATTACTGAATTCAAATATAGATGCAGCTCTAAGAAACAAGCTGTTGTTCTCTATAGTGTTGGCGTTCATAGCTTTTCTGAACTTGAAGCAGTGGAGGGGCGAATGGACTCGTCTCGATTCAAAACATATAACCTTACAGAATGTGACTTGGTCAAAGATCACTTGCGTTACTTGATGGGGAGCAGATTAGATGTCGAAAATGAAATCCTCTGCCGCTTTGTCTTCCCGGAGAGGCCAGGGGCTTTAATGAAATTTTTAGACACTTTTAGCCCTCCTTGGAATGTCAGTTTGTTCCATTACCGCGCACGGGGTGAAATTGGTGCCAACGTATTGGTTGGAATGCAAGTTGTAAGAGAAGGGATGGATGAGTTCCATTCTCGGGCAGTTAATCTTGGGTTTGATTATGAGGTTGTAACTGATGATGATGATTTCCGGCTTTTGATGCGATGA 1872 45.3 MESLLFVPTHSSARLTPKRSVSATPHSPFSGNKFPTTATITIKTRHINRRIYKPFIPSAFSKPTTDVPTCTSVVTRDNTLQKSHSSPPPRKRVLSDSLQYPPGFLGGLPDRTAVDSDDDMIGAMRQLTNILSSKVYDVATESPLQLAPNLSERFGVNIWLKREDLQPVFSFKLRGAYNMMVKLPKEQLERGVICSSAGNHAQGVAFSAKKLGCDAVIVMPVTTPEIKWKSVERLGARVVLVGDTYEEAQAYAKKQGQDEGRTFIPPFDHPDVIMGQGTIGMEIGRQMQGPLHAIFVPVGGGGLIAGIAAYVKRVSPQVKIIGVEPSEANAMALSLHHGERVILENVGAFTDGVAVKEVGKETFRLCKELVDGIVLVNRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYSLKGENVVVITSGANMNFDKLRMVTELANVGRKQEALFAAVIPEETGSFKQFCELVSPLNITEFKYRCSSKKQAVVLYSVGVHSFSELEAVEGRMDSSRFKTYNLTECDLVKDHLRYLMGSRLDVENEILCRFVFPERPGALMKFLDTFSPPWNVSLFHYRARGEIGANVLVGMQVVREGMDEFHSRAVNLGFDYEVVTDDDDFRLLMR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1153272 1156039 - Conep03aG0022300.1 Cone3ag0217 433676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0217 623 Pfam Pyridoxal-phosphate dependent enzyme 140 427 IPR001926 -
Cone3ag0217 623 CDD ACT_ThrD-I_2 542 622 - -
Cone3ag0217 623 Gene3D - 143 421 IPR036052 -
Cone3ag0217 623 Gene3D - 175 266 IPR036052 -
Cone3ag0217 623 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 163 176 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Cone3ag0217 623 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 127 613 IPR050147 GO:0003941(PANTHER)|GO:0004794(PANTHER)|GO:0006565(PANTHER)|GO:0006567(PANTHER)|GO:0009097(PANTHER)
Cone3ag0217 623 ProSiteProfiles ACT-like domain profile. 450 521 IPR001721 -
Cone3ag0217 623 ProSiteProfiles ACT-like domain profile. 543 614 IPR001721 -
Cone3ag0217 623 MobiDBLite consensus disorder prediction 14 35 - -
Cone3ag0217 623 FunFam Threonine dehydratase 449 623 - -
Cone3ag0217 623 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 130 476 IPR036052 -
Cone3ag0217 623 Gene3D Biosynthetic Threonine Deaminase; Domain 3 449 623 IPR038110 -
Cone3ag0217 623 SUPERFAMILY ACT-like 530 622 IPR045865 -
Cone3ag0217 623 CDD Thr-dehyd 127 431 - -
Cone3ag0217 623 Pfam C-terminal regulatory domain of Threonine dehydratase 535 620 IPR001721 -
Cone3ag0217 623 Pfam C-terminal regulatory domain of Threonine dehydratase 440 529 IPR001721 -
Cone3ag0217 623 MobiDBLite consensus disorder prediction 76 92 - -
Cone3ag0217 623 FunFam L-threonine dehydratase 241 421 - -
Cone3ag0217 623 NCBIfam threonine ammonia-lyase, biosynthetic 127 621 IPR005787 GO:0004794(InterPro)|GO:0009097(InterPro)
Cone3ag0217 623 MobiDBLite consensus disorder prediction 76 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0217 K01754 - - cit:102621403 852.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1227 Cone-Chr13:9425744 Cone3ag0217 Cone-Chr3:1153272 1.46E-169 wgd
Cone19ag1213 Cone-Chr19:8451451 Cone3ag0217 Cone-Chr3:1153272 4.33e-315 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1078 . . Bda01g00374 . . Bpe03g01260 . Bma10g00066 . . . Cma07g00883 Car03g01073 Car07g00872 Sed14g0355 Cpe10g00253 . Bhi03g01496 Tan03g1148 Cmetu08g1792 . Hepe04g0990 . . Cla04g00945 Cam04g0985 Cec04g1108 Cco04g1167 Clacu04g1013 Cmu04g1000 Cre04g1055 Cone3ag0217 . Cone13ag1227 Cone19ag1213 Lsi01g01273 Csa06g02638 Chy08g00896 . Blo07g01369 . . Bda05g01197 . Bpe02g00739 . . . Cmo03g01186 Cmo07g00915 . . . . . Cpe19g00442 . . . . . . . . . . . . . . . . . Cme08g01247
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001322 3 3 2 2 2 3 1 3 4 3 2 3 2 2 3 2 3 2 1 2 3 1 2 3 2 4 1 5 4 1 74