Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0231 ATGGCATTGCAGAATATACAATATGCATCTCTTGTTCTATTGCTAGTTGTCTATTACAACACAAATGCAGCGGTTAGCGAAAAATCACTCTTCACAGCGGGCCCATGGAAACAGGCTCATGCCACGTTCTACGAAGGCGACTCCGGAACTTTCGGGGGAGCATGTGGTTATGACGAAGTCGTTAAACAAGGATACGGGCTAGAAACGGCAGCATTGAGTGATGCATTGTTCAACAATGGATCAACATGTGGAGCTTGTTATGAGATCAAATGTAGAGATAATCCTCAATGGTGCAAACCAGGGCAGCCATCTCTTTTTATCACAGCCACTAACCATTGCCCTCCCAATTGGGATATACCAAGTGACAATGGCGGTTGGTGCAATTCTCCTCGTGAGCATTTCGATTTGGCCAAGCCTATTTTTCTTCACATTGTTAATGAATACAGAGCCGGCATCTCTCCTGTCAGTTACCGCAGGGTTCCATGCCGAAAGCAAGGAGGGATAAGGTTTACGATAACAGGGAATCCTTGGTACAATGAGGTTCTAGTATGGAATGTGGGAGGAGCTGGGGATGTGAAAAGCGTGCAAGTGAAGGGTAGTAAGAAGTTGAAATGGACTACGATGAGCCGCAGTTGGGGCTCGAAGTGGATCACGGGTGAAAATATGGTCGGAGAGTCGTTGACTTTCCAAGTCACGGCTAGTGACGGTAGCCAATCAACTGCATGGAATGTTGCTCCCAATAATTGGCAATTTGGTCAAACCTTTGAGGACAATCAGAACTTCAATTGA 789 46.01 MALQNIQYASLVLLLVVYYNTNAAVSEKSLFTAGPWKQAHATFYEGDSGTFGGACGYDEVVKQGYGLETAALSDALFNNGSTCGACYEIKCRDNPQWCKPGQPSLFITATNHCPPNWDIPSDNGGWCNSPREHFDLAKPIFLHIVNEYRAGISPVSYRRVPCRKQGGIRFTITGNPWYNEVLVWNVGGAGDVKSVQVKGSKKLKWTTMSRSWGSKWITGENMVGESLTFQVTASDGSQSTAWNVAPNNWQFGQTFEDNQNFN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1231774 1232808 + Conep03aG0023700.1 Cone3ag0231 433690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0231 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Cone3ag0231 262 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 Gene3D - 167 262 IPR036749 -
Cone3ag0231 262 Gene3D - 20 163 IPR036908 -
Cone3ag0231 262 CDD DPBB_EXPA_N 35 162 - -
Cone3ag0231 262 Pfam Lytic transglycolase 69 157 IPR009009 -
Cone3ag0231 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Cone3ag0231 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576(InterPro)
Cone3ag0231 262 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Cone3ag0231 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Cone3ag0231 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Cone3ag0231 262 PANTHER EXPANSIN-A15 13 259 IPR002963 GO:0009664(InterPro)
Cone3ag0231 262 Pfam Expansin C-terminal domain 168 246 IPR007117 -
Cone3ag0231 262 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Cone3ag0231 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 167 IPR007112 -
Cone3ag0231 262 SMART dpbb_1 69 157 IPR007112 -
Cone3ag0231 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0231 Cone-Chr3:1231774 Cone3ag0234 Cone-Chr3:1253528 3.93E-205 dispersed
Cone3ag0231 Cone-Chr3:1231774 Cone3ag0232 Cone-Chr3:1242649 3.93E-205 tandem
Cone10ag0212 Cone-Chr10:1038269 Cone3ag0231 Cone-Chr3:1231774 1.99E-72 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone3ag0231 Cone-Chr3:1231774 1.77E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0231 - - - 0.0