Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0236 ATGGCATTGCAGAATATACAATATGCATCTCTTGTTCTATTGCTAGTTGTCTATTACAACACAAATGCAGCGGTTAGCGAAAAATCACTCTTCACAGCGGGCCCATGGAAACAGGCTCATGCCACGTTCTACGAAGGCGACTCCGGAACTTTCGGGGGAGCATGTGGTTATGACGAAGTCGTTAAACAAGGATACGGGCTAGAAACGGCAGCATTGAGTGATGCATTGTTCAACAATGGATCAACATGTGGAGCTTGTTATGAGATCAAATGTAGAGATAATCCTCAATGGTGCAAACCAGGGCAGCCATCTCTTTTTATCACAGCCACTAACCATTGCCCTCCCAATTGGGATATACCAAGTGACAATGGCGGTTGGTGCAATTCTCCTCGTGAGCATTTCGATTTGGCCAAGCCTATTTTTCTTCACATTGTTAATGAATACAGAGCCGGCATCTCTCCTGTCAGTTACCGCAGGGTTCCATGCCGAAAGCAAGGAGGGATAAGGTTTACGATAACAGGGAATCCTTGGTACAATGAGGTTCTAGTATGGAATGTGGGAGGAGCTGGGGATGTGAAAAGCGTGCAAGTGAAGGGTAGTAAGAAGTTGAAATGGACTACGATGAGCCGCAGTTGGGGCTCGAAGTGGATCACGGGTGAAAATATGGTCGGAGAGTCGTTGACTTTCCAAGTCAACGGCTAG 702 46.58 MALQNIQYASLVLLLVVYYNTNAAVSEKSLFTAGPWKQAHATFYEGDSGTFGGACGYDEVVKQGYGLETAALSDALFNNGSTCGACYEIKCRDNPQWCKPGQPSLFITATNHCPPNWDIPSDNGGWCNSPREHFDLAKPIFLHIVNEYRAGISPVSYRRVPCRKQGGIRFTITGNPWYNEVLVWNVGGAGDVKSVQVKGSKKLKWTTMSRSWGSKWITGENMVGESLTFQVNG 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1264398 1265345 + Conep03aG0024200.1 Cone3ag0236 433695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0236 233 PANTHER EXPANSIN-A15 13 231 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 Pfam Lytic transglycolase 69 157 IPR009009 -
Cone3ag0236 233 SUPERFAMILY PHL pollen allergen 164 231 IPR036749 -
Cone3ag0236 233 Pfam Expansin C-terminal domain 168 231 IPR007117 -
Cone3ag0236 233 Gene3D - 167 233 IPR036749 -
Cone3ag0236 233 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Cone3ag0236 233 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Cone3ag0236 233 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Cone3ag0236 233 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Cone3ag0236 233 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 PRINTS Expansin signature 214 233 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Cone3ag0236 233 CDD DPBB_EXPA_N 35 162 - -
Cone3ag0236 233 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 233 IPR007117 -
Cone3ag0236 233 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Cone3ag0236 233 Gene3D - 20 163 IPR036908 -
Cone3ag0236 233 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 167 IPR007112 -
Cone3ag0236 233 SMART dpbb_1 69 157 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0236 Cone-Chr3:1264398 Cone3ag0239 Cone-Chr3:1278015 3.51E-180 dispersed
Cone3ag0234 Cone-Chr3:1253528 Cone3ag0236 Cone-Chr3:1264398 3.94E-180 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0236 - - - 0.0