Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0237 ATGGAAGCACGAGCTGTTCTCTTTAGTCTTACCTTGGTCTTCATCCTCTCATCATCAGGTGTTCACTCAACCACATTCACAATAACAAACAACTGTCCGTACACAATCTGGCCAGCAACCCTTACCGGAGTCGGGAGTCAACTTCCAACATCCGGGTTTGAGTTAAAAACAAAAACTTCACAAACCCTAAACGCACCGGTTCCATGGTCCGGCCGAGTTTGGGCCCGAACCGAATGCTTGTATGAATCTGGCGGTGGAAAGTTCTCTTGTGCCACAGCTGATTGTGCCTCCGGTCAAGTCTCATGCATCGGTTCCGGTGGGATTCCCCCTGCATCGCTCATCGAATTCACTCTATCTGCCAATAACAACCAACCCGATTTTTACGACATCAGCCTTGTTGATGGTTTCAATCTACCTGTTTCGGTGAGCCCACAAGGCGGGTCGGGGATATGTGCTTCGCCAAATTGTTCTGCAAATTTGAATGCAGTTTGTCCATCTGAGTTGGCCGTGAAAGGGCTAGATGGGAGCGTGATTGCGTGTAAAAGTGCTTGTGTGGCTTTCAATACCCCGGAGTATTGTTGTAGCGGTAATCATAGCTCACCGAATACCTGCTCGCCGTCTACGTATTCTGCTCTATTTAAGAATCAGTGTCCTCAAGCTTACAGTTATGCTTATGATGATGGAAGTAGTCTTTTCACATGTTCTGGTGTGGCAAACTATGTTATCACATTTTGCCCATGA 741 47.23 MEARAVLFSLTLVFILSSSGVHSTTFTITNNCPYTIWPATLTGVGSQLPTSGFELKTKTSQTLNAPVPWSGRVWARTECLYESGGGKFSCATADCASGQVSCIGSGGIPPASLIEFTLSANNNQPDFYDISLVDGFNLPVSVSPQGGSGICASPNCSANLNAVCPSELAVKGLDGSVIACKSACVAFNTPEYCCSGNHSSPNTCSPSTYSALFKNQCPQAYSYAYDDGSSLFTCSGVANYVITFCP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1266987 1267908 - Conep03aG0024300.1 Cone3ag0237 433696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0237 246 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Cone3ag0237 246 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cone3ag0237 246 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Cone3ag0237 246 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cone3ag0237 246 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cone3ag0237 246 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Cone3ag0237 246 SMART tha2 26 246 IPR001938 -
Cone3ag0237 246 Pfam Thaumatin family 30 246 IPR001938 -
Cone3ag0237 246 Gene3D Thaumatin 24 246 IPR037176 -
Cone3ag0237 246 FunFam Thaumatin-like protein 1a 24 246 - -
Cone3ag0237 246 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Cone3ag0237 246 PIRSF PR5 1 246 IPR001938 -
Cone3ag0237 246 PANTHER OS03G0233200 PROTEIN 11 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cone3ag0237 246 CDD TLP-PA 25 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0324 Cone-Chr10:1531173 Cone3ag0237 Cone-Chr3:1266987 3.81E-71 dispersed
Cone11ag1249 Cone-Chr11:9330653 Cone3ag0237 Cone-Chr3:1266987 4.62E-41 dispersed
Cone18ag1338 Cone-Chr18:9251724 Cone3ag0237 Cone-Chr3:1266987 6.75E-72 dispersed
Cone3ag0237 Cone-Chr3:1266987 Cone8ag0854 Cone-Chr8:8476467 4.37E-93 dispersed
Cone3ag0235 Cone-Chr3:1256785 Cone3ag0237 Cone-Chr3:1266987 3.07E-97 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0237 - - - 0.0