Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0240 ATGGCATTGTGGAATTTGCAATTTGCACTTCTTGCTCTATTGCTTGTCTATTACAACACAAATGCAGCGGTTAGCAAAAAATCACCCTTCACAGCGGGCCCATGGAAACAGGCTCATGCCACGTTCTACGAAGGCGACCCCGGAACTTTCGGGGGAGCATGTGGTTATGACGAAGTCGTTAAACAAGGATATGGGCTAGAAACGGCAGCATTGAGTGATGCATTGTTCAACAATGGATCAACATGTGGAGCTTGTTATGAGATCAAATGTAGAGACAATCCTCAATGGTGCAAACCAGGGCAGCCATCTCTTTTTATCACAGCCACTAACCATTGCCCTCCCAATTGGGATGTACCAAGTGACAATGGCGGTTGGTGCAATTCTCCTCGTGAGCATTTTGATCTAGCTAAGCCTATTTTTCTTCACATTATTAATGAATACAGAGCCGGCATCTCTCCTGTCAGTTACCGCAGGGTTCCATGTCGAAAGCAAGGAGGGATAAGGTTTACGATAACAGGGAATCCTTGGTACAATGAGGTTCTAGTATGGAATGTGGGAGGAGCTGGGAATGTGAAAAGCGTGCAAGTGAAGGGTAGTAAAAAGTTGAAATGGACTACGATGAACCGCAGTTGGGGCTCGAAGTGGATCACAGGTGAAAATATGGTCGGAGAGTCATTGACTTTCAGGGTCATGGCCAGTGACAGGAGACGCTCCACCTCGTGGAATATTGTCCCCGAGAATTGGAAATTTGGGCAGACCTTTGAGGGCAAGAACTTCAAATGA 783 46.36 MALWNLQFALLALLLVYYNTNAAVSKKSPFTAGPWKQAHATFYEGDPGTFGGACGYDEVVKQGYGLETAALSDALFNNGSTCGACYEIKCRDNPQWCKPGQPSLFITATNHCPPNWDVPSDNGGWCNSPREHFDLAKPIFLHIINEYRAGISPVSYRRVPCRKQGGIRFTITGNPWYNEVLVWNVGGAGNVKSVQVKGSKKLKWTTMNRSWGSKWITGENMVGESLTFRVMASDRRRSTSWNIVPENWKFGQTFEGKNFK 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1280462 1281489 + Conep03aG0024600.1 Cone3ag0240 433699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0240 260 Pfam Lytic transglycolase 68 156 IPR009009 -
Cone3ag0240 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 PRINTS Expansin signature 213 234 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 SMART dpbb_1 68 156 IPR007112 -
Cone3ag0240 260 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Cone3ag0240 260 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cone3ag0240 260 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Cone3ag0240 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Cone3ag0240 260 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
Cone3ag0240 260 PANTHER EXPANSIN-A15 11 259 IPR002963 GO:0009664(InterPro)
Cone3ag0240 260 CDD DPBB_EXPA_N 34 161 - -
Cone3ag0240 260 SUPERFAMILY Barwin-like endoglucanases 34 184 IPR036908 -
Cone3ag0240 260 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Cone3ag0240 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 166 IPR007112 -
Cone3ag0240 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Cone3ag0240 260 Gene3D - 166 259 IPR036749 -
Cone3ag0240 260 Gene3D - 19 162 IPR036908 -
Cone3ag0240 260 Pfam Expansin C-terminal domain 167 245 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0240 Cone-Chr3:1280462 Cone5ag0260 Cone-Chr5:1106128 7.55E-114 dispersed
Cone3ag0239 Cone-Chr3:1278015 Cone3ag0240 Cone-Chr3:1280462 1.64E-183 tandem
Cone3ag0240 Cone-Chr3:1280462 Cone3ag0241 Cone-Chr3:1282029 1.69E-110 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0240 - - - 0.0