Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0241 ATGGCATTACCCCGAGCATCGCTAGTCCAGCTTGTGGCTCTTCTACTGCTTCTTGTCCATTCAAGCACAAACGCCGTATTAGGCTATCCCCAAATCCGCAGGGCAAAGAATCACAAAAGACCATTCAGGGCCGGCCCATGGAAGTACGCTCATGCCACTTTCTATGATGGGGGTTCTGGAACATTTGGGGTGGTTGTGGTTATCATGATGTCGTTAAAGAAGGACGAACCTCAATGGTGCAAGCCAGGGCAGCGATCTCTTATTGTCACAGCGACTAACCACTGCCCTCCAAATTCCAATGGCGGATGGTGCAACCCCCCTCGTGAGCATTTCGACATAGCCAAGCCTGTTTTCCTTAACATTGTTGAATACAAAGCCGGCATCATTCCTATCAATTACCACAGGTTTCCATGCCGAAAGCAAGGAGGGATAAGGTTTACAATAACAGGGAATCCTTGGTACAATGAGGTTCTAGTATGGAATGTGGGAGGAGTTGGGGATGTGAAAAGTGTGCAAGTGAAGGGTAGTCAAAAGCTGAAATGGACTACAATGAACCGAATGTGGGGCCAAAGGTGGGTCACAGGTGCAAAGATGGTCAGAGAGTCATTGACGTTCAGAGTCACGGCGAGTGATGGTAGACACTCCACCTCATGGCACATTGCCTCCAAGAATTGGCAGTATGGGCAAACCTTTGAGGGCAAGAACTTCACATAA 714 48.6 MALPRASLVQLVALLLLLVHSSTNAVLGYPQIRRAKNHKRPFRAGPWKYAHATFYDGGSGTFGVVVVIMMSLKKDEPQWCKPGQRSLIVTATNHCPPNSNGGWCNPPREHFDIAKPVFLNIVEYKAGIIPINYHRFPCRKQGGIRFTITGNPWYNEVLVWNVGGVGDVKSVQVKGSQKLKWTTMNRMWGQRWVTGAKMVRESLTFRVTASDGRHSTSWHIASKNWQYGQTFEGKNFT 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1282029 1283059 + Conep03aG0024700.1 Cone3ag0241 433700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0241 237 PRINTS Expansin signature 87 97 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 PRINTS Expansin signature 118 131 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 PRINTS Expansin signature 190 211 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 PRINTS Expansin signature 154 175 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 PRINTS Expansin signature 73 84 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 PRINTS Expansin signature 219 235 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 PRINTS Expansin signature 142 154 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 PRINTS Expansin signature 101 118 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 Gene3D - 68 139 IPR036908 -
Cone3ag0241 237 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 143 IPR007112 -
Cone3ag0241 237 PANTHER EXPANSIN-A15 77 236 IPR002963 GO:0009664(InterPro)
Cone3ag0241 237 SUPERFAMILY PHL pollen allergen 140 233 IPR036749 -
Cone3ag0241 237 SUPERFAMILY Barwin-like endoglucanases 46 161 IPR036908 -
Cone3ag0241 237 Pfam Lytic transglycolase 73 133 IPR009009 -
Cone3ag0241 237 Pfam Expansin C-terminal domain 144 221 IPR007117 -
Cone3ag0241 237 SMART dpbb_1 50 133 IPR007112 -
Cone3ag0241 237 Gene3D - 143 236 IPR036749 -
Cone3ag0241 237 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 153 233 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0212 Cone-Chr10:1038269 Cone3ag0241 Cone-Chr3:1282029 3.50E-87 dispersed
Cone3ag0241 Cone-Chr3:1282029 Cone5ag1140 Cone-Chr5:5119294 1.46E-71 dispersed
Cone3ag0240 Cone-Chr3:1280462 Cone3ag0241 Cone-Chr3:1282029 1.69E-110 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0241 - - - 0.0