Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0242 ATGCCAATCCGGAACATCGCCGTCGGTAGGTACCAGGAGGCAGCTCACCCCGACGCCCTAAGGGCGGCGTTGGCTGAGTTCATCTCCACTCTTATCTTTGTTTTCGCCGGTGAAGGTTCTGGCATGGCCTTCAGCTTTCTCACTAGTGACGGCTCAACCACACCGGCTGGCCTTGTCGCCGCAGCTCTCGCTCACGCTTTCGGTCTTTTCGTCGCCGTCTCCGTCGCCGCTAACATCTCCGGCGGCCACGTGAACCCTGCCGTCACCTTCGGCGCCTTCCTTGGCGGCAACATCACTCTCCTACGTGGTATTCTGTACTGGATCGCTCAGCTTCTCGGATCCACCGCAGCTTGCTTGCTTCTCAAGTTCGCCACTAACGGCCAGACCACCTCAGCTTTCGCTCTATCGTCAGGAGTTGGAGTATGGAACGCCTTCGTTTTGGAGATAGTTATGACCTTCGGATTGGTGTACACAGTCTACGCAACAGCCATTGACCCGAAGAAGGGAAACATCGGAATTATTGCTCCGATCGCAATTGGTTTCATCGTGGGTGCAAACATTTTAGCCGGTGGGGCATTTGACGGGGCTTCGATGAACCCAGCGGTGTCATTCGGGCCAGCCTTGGTGAGCTGGAACTGGACAAACCACTGGGTATACTGGGCCGGCCCATTGGTTGGTGGTGGGCTAGCAGGCCTTGTCTACGAATTCGTCTTTATCAACCAGACCCACGAGCAGCTTCCCTCCACTGACTTTTAA 756 55.95 MPIRNIAVGRYQEAAHPDALRAALAEFISTLIFVFAGEGSGMAFSFLTSDGSTTPAGLVAAALAHAFGLFVAVSVAANISGGHVNPAVTFGAFLGGNITLLRGILYWIAQLLGSTAACLLLKFATNGQTTSAFALSSGVGVWNAFVLEIVMTFGLVYTVYATAIDPKKGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWNWTNHWVYWAGPLVGGGLAGLVYEFVFINQTHEQLPSTDF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1297684 1299583 + Conep03aG0024800.1 Cone3ag0242 433701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0242 251 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cone3ag0242 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Cone3ag0242 251 PANTHER AQUAPORIN-8 5 247 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cone3ag0242 251 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0242 251 SUPERFAMILY Aquaporin-like 12 245 IPR023271 -
Cone3ag0242 251 FunFam Probable aquaporin TIP1-1 4 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1114 Cone-Chr11:8673417 Cone3ag0242 Cone-Chr3:1297684 1.44E-30 dispersed
Cone13ag0365 Cone-Chr13:3340961 Cone3ag0242 Cone-Chr3:1297684 3.03E-108 dispersed
Cone17ag1120 Cone-Chr17:8302366 Cone3ag0242 Cone-Chr3:1297684 1.49E-82 dispersed
Cone19ag0307 Cone-Chr19:2341700 Cone3ag0242 Cone-Chr3:1297684 2.48E-107 dispersed
Cone1ag0665 Cone-Chr1:6272582 Cone3ag0242 Cone-Chr3:1297684 3.30E-144 dispersed
Cone3ag0242 Cone-Chr3:1297684 Cone5ag1177 Cone-Chr5:5280620 7.37E-141 dispersed
Cone16ag0705 Cone-Chr16:8283798 Cone3ag0242 Cone-Chr3:1297684 4.26E-102 transposed
Cone10ag0215 Cone-Chr10:1051557 Cone3ag0242 Cone-Chr3:1297684 6.12E-174 wgd
Cone18ag0465 Cone-Chr18:2246575 Cone3ag0242 Cone-Chr3:1297684 1.70E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0242 K09873 - vvi:100233004 410.609