Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0244 | ATGTTTTTCTGTCCTTCAGCGAAGATGCTGTGCAGGACCTACATTGTGCTACTTTCGATTTTTCTGACCTCAACTACTCACCTGGGTCTATCCACGTTCAATCTTACTCTTTCGGGTCAGCATCCGAACCCGGATCAAGTCGCTCGACAAGTTCACAGGATAGTAAACGCCTCACTGGCAAGAAGAAAAGTGTTCCAAGAATCAGCTCAACAAGACGAGACCTCCTGCCTAACCGGAAACCCAATAGACGACTGCTGGAAGTGTGACCCGGAGTGGCCAAACAACCGCCAACGGCTAGCCGACTGTGTAATCGGGTTTGGCCAACACGCACTCGGGGGCAAAAACGGCGAATACTACATTGTCACAGATGACTCAGACGACGATGCAGTCAACCCCAAACCGGGCACATTACGATACGCAGTGATTCAGACAGAACCTTTGTGGATCGTTTTCCCAAGTAACATGCTAATCAAGCTCTCTCAAGAGCTGATTTTTAACAGCTACAAAACCCTAGATGGTCGAGGAGCCAATGTGCATATTGTTGGTGGTGGGTGCATCACATTGCAGTACATAAGCAATGTCATCATACACAACATTCATATTCATCATTGTTATCCATCAGGCAATACTCTAGTGCGCTCAAGTCCAACTCATTACGGGTATCGGACAAAATCAGATGGCGACGGGATCTCCATCTTCGGTTCGACAGACATATGGATCGATCATTGTTCGCTTTCGCACTGCAAAGACGGTTTGATAGATGCGGTCATGGGATCGACGGCGATAACAATATCAAACAACTTTTTCTCACATCACGATGAAGTCATGTTGTTGGGCCATAGTGATACGTACCTGCCCGATTCGGGCATGCAAGTGACAATAGCATTCAACCATTTTGGAGAGAAGCTGGTACAGAGGATGCCTAGATGCCGACGGGGATATATTCATGTCGTGAACAACGACTTTACGCAGTGGGAAATGTATGCTATTGGTGGGAGTGGTAACCCTACTATCAACAGTCAGGGTAATCGTTACACTGCTCCTACTAACCGTAACGCTAAGGAGGTGACGAAGAGAGTGAGCACGGGGGAGAGTGAATGGAGGGGGTGGAACTGGAGGTCGGAGGGAGATATACTGGTAAACGGTGCATTTTTTGTGGCGTCAGGTGAAGGTTTAGAGGTAAAGTATGAGAAAGCATATAGTGTTGAGCCTAAGTCAGCTGCGCTTATTGACCTCCTCACCATGCACGCCGGCCCCCTTGGAGTTGGTGGCAGGGACAACAACGTGGGAATGTGGAGTAGAGGACCCGACACTGGTGGAACTGGATTCATGCAAGGCCCAGATTTTACAGACGACATGTCGGGAAGCAAGAAGCATCTTATCCCGTTGTCTACTACCATATTCTTGTCCCTCTTTGTCACAATCTTACTTTGCTATCTTTTCTCATTCCCATTGAAGTCTAATAAATGA | 1470 | 47.62 | MFFCPSAKMLCRTYIVLLSIFLTSTTHLGLSTFNLTLSGQHPNPDQVARQVHRIVNASLARRKVFQESAQQDETSCLTGNPIDDCWKCDPEWPNNRQRLADCVIGFGQHALGGKNGEYYIVTDDSDDDAVNPKPGTLRYAVIQTEPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTLVRSSPTHYGYRTKSDGDGISIFGSTDIWIDHCSLSHCKDGLIDAVMGSTAITISNNFFSHHDEVMLLGHSDTYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVSTGESEWRGWNWRSEGDILVNGAFFVASGEGLEVKYEKAYSVEPKSAALIDLLTMHAGPLGVGGRDNNVGMWSRGPDTGGTGFMQGPDFTDDMSGSKKHLIPLSTTIFLSLFVTILLCYLFSFPLKSNK | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1304395 | 1306920 | + | Conep03aG0025000.1 | Cone3ag0244 | 433703 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0244 | 489 | SUPERFAMILY | Pectin lyase-like | 74 | 405 | IPR011050 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 370 | 394 | IPR018082 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 306 | 325 | IPR018082 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 399 | 422 | IPR018082 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 126 | 151 | IPR018082 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 162 | 178 | IPR018082 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 226 | 247 | IPR018082 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 102 | 119 | IPR018082 | - | |
| Cone3ag0244 | 489 | PRINTS | Pollen allergen Amb family signature | 328 | 347 | IPR018082 | - | |
| Cone3ag0244 | 489 | PANTHER | PECTATE LYASE 18-RELATED | 31 | 422 | IPR045032 | GO:0030570(InterPro) | |
| Cone3ag0244 | 489 | Gene3D | - | 79 | 421 | IPR012334 | - | |
| Cone3ag0244 | 489 | FunFam | Pectate lyase | 79 | 421 | - | - | |
| Cone3ag0244 | 489 | SMART | amb_all | 154 | 351 | IPR002022 | - | |
| Cone3ag0244 | 489 | Pfam | Pectate lyase | 164 | 343 | IPR002022 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag1378 | Cone-Chr1:56664382 | Cone3ag0244 | Cone-Chr3:1304395 | 1.01E-216 | dispersed | |
| Cone3ag0244 | Cone-Chr3:1304395 | Cone7ag0370 | Cone-Chr7:1620380 | 4.34E-186 | dispersed | |
| Cone10ag0217 | Cone-Chr10:1059074 | Cone3ag0244 | Cone-Chr3:1304395 | 0 | wgd | |
| Cone11ag1037 | Cone-Chr11:8205776 | Cone3ag0244 | Cone-Chr3:1304395 | 6.61E-217 | wgd | |
| Cone18ag0538 | Cone-Chr18:2654646 | Cone3ag0244 | Cone-Chr3:1304395 | 1.32E-207 | wgd | |
| Cone3ag0244 | Cone-Chr3:1304395 | Cone5ag0370 | Cone-Chr5:1575229 | 1.11E-220 | wgd | |
| Cone3ag0244 | Cone-Chr3:1304395 | Cone5ag1260 | Cone-Chr5:6004920 | 2.42E-52 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0244 | K01728 | - | csv:101203012 | 775.778 |