Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0257 ATGTCACAAGATTCCGAGGCGATAAAGACTAGTGAAGAACAGTGGAAGTGGTCTGAAATTCGAGGTCTTGAGTTAATGTCTTATTCCTCACCATATCAGCAAGAAGAAGACCAAGCAATCGTTGAGGTAGCAAGAAACAGAGGAGCTGAAATGGGGAGCTCTGAATCGGACAAGACGAAGAAGAAGAGCAAGGATGAAGCTGTTCCTTCGGTTGGGTTTTCTCAACTATTCAGATTCGCAGATGGGTTGGATCTTATTTTAATGGCGGTTGGATCAATCGGAGCTTTTGTTCATGGCTGCTCTCTTCCTCTGTTTCTTCGTTTCTTCGCTGATCTCGTTAACTCTTTTGGGTCCAATTCGAATAACGTGGATAAAATGATGCACGAAGTGCTGAAATATGCGTTTTACTTTCTTGTGGTTGGAGGTGCGATTTGGGCCTCATCATGGGCCGAGATAGCCTGCTGGATGTGGACCGGAGAGCGACAGTCCACGAAAATGAGAATCAAGTATCTTGAAGCAGCTTTGAATCAAGACATTCAGTTTTTTGATACAGAAGTTAGAACATCAGATATTATTTTCGCCATTAATTCTGATGCTGTCTTGGTCCAAGACGCCATTAGTGAAAAGTTGGGGAATTTTATACATTATATGGCAACATTTGTGGCTGGATTTGTAGTAGGTTTCACAGCAATATGGCAATTGGCATTAGTCACTCTTGCTGTGGTTCCTCTCATTGGTGTAATTGGAGCCATTTACACTACCACTTCAGCCAAGCTCTCTTCCAAGAGCCAAGACGCTCTTTCTGAAGCCGGAAACATTGTAGAACAGACAATAGTTCAAATCCGTGTTGTTTTTGCATTTGCCGGAGAATCTAAAGCCCTACAAGGGTACTCCTCGGCGTTGAAAACCGCCCAAAGAATCGGTTACAAAAGTGGTTTAGCAAAAGGAGCGGGACTAGGAGCTCTTCTTCTTTGGTACGGTGGTTACCTCGTACGACATCATAACACAAACGGTGGTCTCGCCCTAGCCACCATGTTTGCGGTTATGATAGGTGGACTGGCATTGGGACAATCAGCTCCGAGCATGGGTGCATTTGCAAAAGCAAAAGTTGCGGCTGCCAAAATTTACCGGGTAATTGATCATAAGCCGAAAATCGATAGGAATAGTGAATCCGGTTTGGAATTGGAGTCAGTAACAGGATTAGTTGAGCTCAAAACCGGAAAGACAATAGCTTTAGTCGGAAGCAGTGGGTCCGGTAAGAGCACTGCAGTATCCCTCATAGAGAGATTCTACGACCCTACCTCAGGGCATGTTTTGTTAGATGGACATGACATTAAGTTGTTGAAGTTAAGGTGGTTGAGGCAACAGATAGGGCTTGTTAGTCAAGAACCAGCTCTTTTCGCCACAACGATTAAAGAGAACATCCTTTTTGGTCAGCCAGATGCTGACCTAGTCCAGATTGAAGAAGCTGCTAGAGTGGCTAATGCCCATTCCTTCATTATCAAACTTCCTGACGGCTATGACACTCAGGTAGGGGAAAGAGGATTGCAGCTTTCGGGTGGGCAGAAGCAGAGGATTGCTATAGCAAGAGCAATGTTGAAAAATCCAGCGATTTTGCTCTTAGACGAGGCGACTAGTGCGTTGGACTCTTGA 1653 44.71 MSQDSEAIKTSEEQWKWSEIRGLELMSYSSPYQQEEDQAIVEVARNRGAEMGSSESDKTKKKSKDEAVPSVGFSQLFRFADGLDLILMAVGSIGAFVHGCSLPLFLRFFADLVNSFGSNSNNVDKMMHEVLKYAFYFLVVGGAIWASSWAEIACWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDIIFAINSDAVLVQDAISEKLGNFIHYMATFVAGFVVGFTAIWQLALVTLAVVPLIGVIGAIYTTTSAKLSSKSQDALSEAGNIVEQTIVQIRVVFAFAGESKALQGYSSALKTAQRIGYKSGLAKGAGLGALLLWYGGYLVRHHNTNGGLALATMFAVMIGGLALGQSAPSMGAFAKAKVAAAKIYRVIDHKPKIDRNSESGLELESVTGLVELKTGKTIALVGSSGSGKSTAVSLIERFYDPTSGHVLLDGHDIKLLKLRWLRQQIGLVSQEPALFATTIKENILFGQPDADLVQIEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1355665 1358040 + Conep03aG0026300.1 Cone3ag0257 433716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0257 550 MobiDBLite consensus disorder prediction 43 64 - -
Cone3ag0257 550 CDD ABC_6TM_Pgp_ABCB1_D1_like 88 362 - -
Cone3ag0257 550 FunFam ABC transporter B family member 1 75 400 - -
Cone3ag0257 550 Pfam ABC transporter 403 546 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone3ag0257 550 SUPERFAMILY ABC transporter transmembrane region 76 383 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone3ag0257 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 550 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone3ag0257 550 Pfam ABC transporter transmembrane region 91 351 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone3ag0257 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 549 IPR027417 -
Cone3ag0257 550 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone3ag0257 550 Gene3D ABC transporter type 1, transmembrane domain 75 391 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone3ag0257 550 PANTHER ABC TRANSPORTER B FAMILY 53 405 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cone3ag0257 550 Gene3D - 404 550 IPR027417 -
Cone3ag0257 550 Gene3D - 392 403 IPR027417 -
Cone3ag0257 550 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 89 367 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0257 Cone-Chr3:1355665 Cone7ag1900 Cone-Chr7:12180404 1.72E-163 dispersed
Cone3ag0257 Cone-Chr3:1355665 Cone3ag0259 Cone-Chr3:1358853 2.58E-61 proximal
Cone10ag0226 Cone-Chr10:1108440 Cone3ag0257 Cone-Chr3:1355665 0 wgd
Cone13ag1253 Cone-Chr13:9519558 Cone3ag0257 Cone-Chr3:1355665 2.08E-293 wgd
Cone18ag0467 Cone-Chr18:2249702 Cone3ag0257 Cone-Chr3:1355665 8.31E-122 wgd
Cone19ag1238 Cone-Chr19:8534464 Cone3ag0257 Cone-Chr3:1355665 8.34E-293 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0257 K05658 - gmx:100814667 813.913