Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0259 ATGAGATGGCGTGGTTTGATAAGGAGGAGAATGAGAGTGCTAGAATCGCTTCTAGGCTTGCACTTGATGCAAACGATGTCAGCAATAGGGGATCGAATTTCTGTGATTGTTCAGAACACGGCTCTTATGCTAGTTGCTTGCACTGCTGGGTTTGTTTTGCAATGGCGCCTTGCCCTTGTTCTCGTTGCTGTCTTTCCTCTAGTTGTTGCAGCAACTGTCTTGCAGAAAATGTTCATGACGGGTTTCTCTGGTGATCTTGAAGGAGCTCATGCCAAGGCTACTCAATTAGCTGGAGAGGCTATTGCCAACGTAAGAACCGTTGCTGCTTTTAATGCAGAGGGAAAGGTTGGAGCACTTTTCAGTTCGAATCTTGAAATTCCGTTACGACGTTGCTTTTGGAAGGGACAAATTGCAGGTTGTGGATATGGGATTGCGCAATTCTTGCTCTATGCTTCTTATGCTTTAGGCCTGTGGTATGCTTCTTGGCTTGTAAAGCACGGGATCTCAGATTTCTCGAAAACCATTCGGGTTTTCATGGTTCTGATGGTTTCCGCTAATGGAGCGGCTGAAACACTGACCCTGGCGCCCGATTTCATCAAAGGTGGCCATGCTATGCGTTCGGTTTTCGAGCTTCTAGACCGGAAAACTAAGATTGAACCTGATGATTTAGACGCCGCCCCAGTTCCCGAAAAGCTTCAAGGGGAAGTTGAATTAAAGCATGTAGACTTTTCCTACCCTAGTCGCCCCGATGTCCTGGTTTTCCGAGACCTCACTCTGCGGGCACGAGCAGGGAAGACGCTCGCCCTTGTGGGCCCGAGCGGGTGTGGGAAGAGCTCGGTCATTTCCCTCCTCCAACGATTCTACGAACCCACATCAGGAAGAATTATGATCGACGGGAAGGACATCAGAAAATACAACCTCAAGTCGTTAAGGAAACAAATTGCGATAGTACCTCAAGAACCGTGCCTCTTTGCGGCAACAATATATGAAAACATTGCTTATGGTCACGAATCGAAAGAAGTCACTGAGGCTGAAATCATTGAAGCCTCTACTCTAGCCAATGCCCACAAATTCATATCTTCATTGCCGGAAGGATACAAGACATTTGTTGGAGAGAGAGGGGTTCAACTATCAGGTGGACAGAAACAGAGGATTGCAATATCTCGGGCTCTAGTTTGGAGAGCAGAGATCGTGCTTCTAGAAGAAGCGACTAGTGCACTTGATGTTGAGTCCGAGAAATCGGTCCAAGAAGCTCTAGACAGCACTTGCACGGGAAAAACCACTATTATCATCGCTCATAGGCTTTCAACGGTAAGGAACGCGCATGTTATTGCAGTGGTTGAGGATGGAAAAGTTACAGAGCAAGGATCGCATTCACATTTGTTGAAAAACTATCCTGATGGCTGCTATGCTCGGATTATACAGCTACAAAGGCTGACTCATGGTCAACAAGTGATTGGAATGGGTATGGGTTCAACCTCGTCAGGAAGAACCAGAGAAGATTATGATAAAGAAAGCTAG 1521 46.68 MRWRGLIRRRMRVLESLLGLHLMQTMSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPLVVAATVLQKMFMTGFSGDLEGAHAKATQLAGEAIANVRTVAAFNAEGKVGALFSSNLEIPLRRCFWKGQIAGCGYGIAQFLLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGHAMRSVFELLDRKTKIEPDDLDAAPVPEKLQGEVELKHVDFSYPSRPDVLVFRDLTLRARAGKTLALVGPSGCGKSSVISLLQRFYEPTSGRIMIDGKDIRKYNLKSLRKQIAIVPQEPCLFAATIYENIAYGHESKEVTEAEIIEASTLANAHKFISSLPEGYKTFVGERGVQLSGGQKQRIAISRALVWRAEIVLLEEATSALDVESEKSVQEALDSTCTGKTTIIIAHRLSTVRNAHVIAVVEDGKVTEQGSHSHLLKNYPDGCYARIIQLQRLTHGQQVIGMGMGSTSSGRTREDYDKES 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1358853 1360373 + Conep03aG0026500.1 Cone3ag0259 433718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0259 506 Gene3D ABC transporter type 1, transmembrane domain 24 480 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone3ag0259 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 477 IPR027417 -
Cone3ag0259 506 CDD ABC_MTABC3_MDL1_MDL2 236 477 - -
Cone3ag0259 506 SUPERFAMILY ABC transporter transmembrane region 24 220 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone3ag0259 506 FunFam ABC transporter B family member 19 202 224 - -
Cone3ag0259 506 MobiDBLite consensus disorder prediction 487 506 - -
Cone3ag0259 506 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 20 478 IPR039421 GO:0015421(PANTHER)
Cone3ag0259 506 FunFam ABC transporter B family member 1 226 478 - -
Cone3ag0259 506 SMART AAA_5 263 480 IPR003593 GO:0016887(InterPro)
Cone3ag0259 506 Gene3D - 225 478 IPR027417 -
Cone3ag0259 506 CDD ABC_6TM_Pgp_ABCB1_D2_like 27 218 - -
Cone3ag0259 506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 236 474 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone3ag0259 506 ProSitePatterns ABC transporters family signature. 377 391 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone3ag0259 506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 27 200 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone3ag0259 506 Pfam ABC transporter 255 405 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone3ag0259 506 Pfam ABC transporter transmembrane region 26 183 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0259 Cone-Chr3:1358853 Cone8ag0595 Cone-Chr8:5053599 6.60E-150 dispersed
Cone3ag0257 Cone-Chr3:1355665 Cone3ag0259 Cone-Chr3:1358853 2.58E-61 proximal
Cone3ag0258 Cone-Chr3:1358078 Cone3ag0259 Cone-Chr3:1358853 7.23E-13 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0259 K05658 - csv:101220974 794.267