Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0278 ATGATTACATTTATGGAGTCAAAGGAGAAATCAAAAGAGGCAGACAATAAAAGCTTGGAACCTCAATTATGGCATGCTTGTGCTGGAGGGATGGTCCAAATGCCACAAGTTAGCTCCAATGTCTTCTACTTCCCTCAAGGCCATGCCGAGCACTCGGGTGGGCCCGTCGATTTCAGGAATTTCCCGAAAATTCCACCATTTTTCGTATGTAAAGTTTCCTCCATCACCTTCATGGCTGATCTCGAAACAGACGAGGTTTACTCGAAAATTAGATTAGTTCCTTTGAATGGGGAAGAACTCCAATTTGAAGACAATAGAGTTGGTTTGATTAATGAACCGGAATTACAAGACAAACCGGCTTCTTTCGCAAAGACATTGACTCAATCGGATGCAAACAACGGAGGGGGATTCTCGGTCCCTCGTTATTGTGCTGAAACTATATTTCCGCGATTGGATTACTCAGCCGATCCTCCAGTTCAGACAATCCTTGCTAAGGATGTCCATGGCGAGACATGGAAATTCCGACACATTTATCGTGGGACGCCACGTAGGCATCTATTGACGACCGGGTGGAGTAATTTCGTGAACCGGAAGAAACTTGTTGCTGGGGACTCTATCGTCTTTTTACGGGCTGAAAACGGTGATTTGTGTGTTGGAATTCGTCGTGCAAAAAGGGGTCTTGGGTTTGGGGGTGCGCAGGAGGAATCTTCATCGGGGTGGAATCCGATAGGAGGATTCTCCCCGTTTTTAAATAACGGTTTGGGTTCGAATGGTGGTGGTGGTGGTGGTGGGCCGATGCGTACGGGAAAAGTGAGGCCCGAATCGGTTCTTGAAGCGGTTACTCTAGCCATGAATAAAGAACCGTTTGAGGTTGTTTACTACCCTCGGGCAAGCACTCCCGAGTTTTGTGTCAAGGCTCTGTTAGTGAAGGTAGCATTGCAGGTCCGGTGGGCCCCCGGTTTGAGGTTTAAGATGCCATTTGAAACCGAAGACTCGTCCCGGATTAGTTGGTTCATGGGGACCATATCATCTATTCAAGTTGCCGATCCTATTTTCTGGCCGGAGTCACCTTGGCGGCTACTTCAGGTTACATGGGATGAGCCTGATTTACTTCAGAATGTAAAACGAGTAAGCCCGTGGCTAGTTGACTTAGTATCAAACCTGCCGGCCCTTAACATGTCCCCGATTCCACCTCCGAGGAAAAAATTAAGGTTACCTGAGTACCCTGAATTCAATCTCTACCCGACAAGTAATGCTAATTTCTTCGGGCTTGGGGGCCCATTTAATTGTAGGCCGGATAATAACACCCCTTCTAGCATGCAGGGAGCCTGGCATGGTCATTACGGTCTATCCTTAACCGATCTCTCCCTCGGTAAATTTCAGTCGAACCCATTACTAGTTAGTTTCTCCCCATCCAAATTAGTTCCTCAAAGTGCATCGGAACATTCTAAACAAGATTCAAAGAATCCGGAAGATGTCAAGGAACCAAAGCTCATACTGTTCGGGAAACCAATACTGACCGAGCAACAAATCTCGTTGAGCTGCTCAGGTGGGACTGGGAATAGTTCATCTGATGGAAATATGGAATCGGAGCAGCCAGATGAAACGAGTCGTTGTAAGGTCTTTTTGGACACAAAGGAAGTAGGTCAAAGTCAGACGCTCGATCTTTCGTTGCTCAGTTCGTACGATGAAGTATACAGAAAATTAGCCGACATGTTTAGTATCAGAAATTCAGATACATTAAACCAATCGGTTATGTACCGTGACGGTTCTGGTGCGGTTAAACATATCGGAGAAGAGTCTTTCAGTGAATTTGTGAAAACTGCAAGGAAGTTGACAATTCTAATGGATACGGAAAGTGATAATTTAGGAATTTAG 1878 45.79 MITFMESKEKSKEADNKSLEPQLWHACAGGMVQMPQVSSNVFYFPQGHAEHSGGPVDFRNFPKIPPFFVCKVSSITFMADLETDEVYSKIRLVPLNGEELQFEDNRVGLINEPELQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNRKKLVAGDSIVFLRAENGDLCVGIRRAKRGLGFGGAQEESSSGWNPIGGFSPFLNNGLGSNGGGGGGGPMRTGKVRPESVLEAVTLAMNKEPFEVVYYPRASTPEFCVKALLVKVALQVRWAPGLRFKMPFETEDSSRISWFMGTISSIQVADPIFWPESPWRLLQVTWDEPDLLQNVKRVSPWLVDLVSNLPALNMSPIPPPRKKLRLPEYPEFNLYPTSNANFFGLGGPFNCRPDNNTPSSMQGAWHGHYGLSLTDLSLGKFQSNPLLVSFSPSKLVPQSASEHSKQDSKNPEDVKEPKLILFGKPILTEQQISLSCSGGTGNSSSDGNMESEQPDETSRCKVFLDTKEVGQSQTLDLSLLSSYDEVYRKLADMFSIRNSDTLNQSVMYRDGSGAVKHIGEESFSEFVKTARKLTILMDTESDNLGI 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1451499 1454395 + Conep03aG0028400.1 Cone3ag0278 433737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0278 625 Pfam Auxin response factor 279 362 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone3ag0278 625 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Cone3ag0278 625 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Cone3ag0278 625 SUPERFAMILY DNA-binding pseudobarrel domain 117 224 IPR015300 -
Cone3ag0278 625 FunFam Auxin response factor 317 390 - -
Cone3ag0278 625 ProSiteProfiles PB1 domain profile. 536 625 IPR053793 -
Cone3ag0278 625 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 622 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone3ag0278 625 MobiDBLite consensus disorder prediction 513 530 - -
Cone3ag0278 625 Gene3D - 316 389 - -
Cone3ag0278 625 MobiDBLite consensus disorder prediction 513 537 - -
Cone3ag0278 625 Gene3D - 534 624 - -
Cone3ag0278 625 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
Cone3ag0278 625 FunFam Auxin response factor 120 224 - -
Cone3ag0278 625 Gene3D - 120 224 IPR015300 -
Cone3ag0278 625 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0736 Cone-Chr1:6827721 Cone3ag0278 Cone-Chr3:1451499 2.57E-205 dispersed
Cone3ag0278 Cone-Chr3:1451499 Cone5ag1237 Cone-Chr5:5735524 8.40E-216 dispersed
Cone1ag0715 Cone-Chr1:6611878 Cone3ag0278 Cone-Chr3:1451499 5.89E-69 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone3ag0278 Cone-Chr3:1451499 0 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone3ag0278 Cone-Chr3:1451499 6.32E-173 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone3ag0278 Cone-Chr3:1451499 6.89E-246 wgd
Cone18ag0519 Cone-Chr18:2547457 Cone3ag0278 Cone-Chr3:1451499 5.76E-174 wgd
Cone19ag1251 Cone-Chr19:8592477 Cone3ag0278 Cone-Chr3:1451499 7.29E-250 wgd
Cone3ag0278 Cone-Chr3:1451499 Cone5ag1219 Cone-Chr5:5588367 1.56E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45771 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0278 K14486 - mdm:103419284 807.749