Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0280 ATGATCTTTGTCCTTGTTTACTCCACCGCGGGAATTTCTGGCGGGCACATTAACCCGGCCGTGACTTTTGGGCTTTTCTTGGCCCGTAAGGTTTCGTTGATTCGGGCCGTTTTGGACATGGTACCCCAGTGTCGAGGGGTTTTTTGTGGGTGTGGGCTTGTGAAAGCGTTTCAGAAGAGTTATTATGATCGATACGGAGGTGGGGCCAATAAGCTTGCTGATGGGTACAGTAAAGGGACAGGATTAGGGGCTGAGATTATCGGAACATTTGTCCTTGTCTACACTGTTTTCTCGGCCACTGACCCGAAAAGGAACGCTAGAGACTCGCATGTTCCCGTTTTGGCGCCACTGCCAATTGGGTTCTCCGTATTCATTGTCCACTTGGCTACTATCCCGATCACCGGCACGGGAATCGTAAGGTTAAACATGCCTCAAATTCCAAATACTCCCAAGAGAACAAAACTTTCCCCTCTACGATTCCCCAATTTCACCAAAACCTTTGTGTCCCCAGAGCCCCTCTTCAGCCAGAAATAG 534 49.44 MIFVLVYSTAGISGGHINPAVTFGLFLARKVSLIRAVLDMVPQCRGVFCGCGLVKAFQKSYYDRYGGGANKLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFSVFIVHLATIPITGTGIVRLNMPQIPNTPKRTKLSPLRFPNFTKTFVSPEPLFSQK 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1462429 1463077 + Conep03aG0028600.1 Cone3ag0280 433739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0280 177 ProSitePatterns MIP family signature. 16 24 IPR022357 -
Cone3ag0280 177 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0280 177 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0280 177 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0280 177 SUPERFAMILY Aquaporin-like 2 137 IPR023271 -
Cone3ag0280 177 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 138 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cone3ag0280 177 Gene3D Glycerol uptake facilitator protein. 1 140 IPR023271 -
Cone3ag0280 177 Pfam Major intrinsic protein 1 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0280 Cone-Chr3:1462429 Cone5ag1231 Cone-Chr5:5673499 2.83E-83 dispersed
Cone1ag1352 Cone-Chr1:56550924 Cone3ag0280 Cone-Chr3:1462429 1.05E-77 wgd
Cone10ag0252 Cone-Chr10:1213414 Cone3ag0280 Cone-Chr3:1462429 2.24E-84 wgd
Cone18ag0517 Cone-Chr18:2534956 Cone3ag0280 Cone-Chr3:1462429 5.40E-82 wgd
Cone3ag0280 Cone-Chr3:1462429 Cone5ag0337 Cone-Chr5:1440129 2.85E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0280 K09872 - cit:102609769 254.218