Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag0282 | ATGCAAATGATGTCGGGTAGTACTCATGCCTTTTCTCTTCCTACGTCAATAGGAGTAGGAGGTTTCTCTCAAGAGAAAACCACAAACCCTAACCCCAATCCGAATCCGAATCCAAACCCAGTCGTCAAGAAGAAAAGAAATCAACCAGGAAACCCAGATCCAGAGGCTGAGGTTATTGCGTTATCTCCGAAAACGCTTATGGCGACCAACAGATTCATATGTGAAATTTGCAAGAAAGGGTTTCAAAGGGACCAGAATTTACAGCTTCATAGAAGGGGTCATAATCTTCCATGGAAGCTCCGACAAAGGACCAACAAAGAAGTTGTGAGGAAGAAGGTTTATATTTGCCCTGAGAAAACTTGTGTCCATCATGACCCATCAAGAGCTCTTGGAGACCTCACTGGAATCAAAAAGCATTTCAGCAGGAAACATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCTAAGAAATATGCAGTTCAATCCGACTGGAAAGCTCACTCTAAAACCTGTGGAACAAGAGAGTACAAGTGTGATTGTGGAACCCTTTTCTCCAGGAAAGACAGTTTCATAACGCATAGAGCTTTCTGCGATGCTTTAGCTGAAGAGAGTGCAAGATTAACTTCAGTTCCGGCCTCGAATTTGCATTTTGGAAATGATTCGGCAAGTGAAGCCCCAATCGAACCCCAATCCACTATGTCCCAGGGATTTCTCGGTCGAGGAGTTCAAGGTGTTTCCGGAATTTCCCACTTAGGCTCAGGAACATTTCTTCGAGAATTTAGCGATCATATAAATGCAAGCAACTCTCTCGGATCTCCTGATCACCAGCAAAAAGCCAGACTCTTATTTGGTTTGAGTGATGAAGCAAATAACAACAACTCCCATCATCATGATCGGTTCAGTTCCATGGATCAACATCTATTAGGTTTGCCCGACCACATGGGCCTGCAAGTGGCATCGGAAAATGTATTCGACTCTTCTCAAATGTCGAGTTTCGGAATTGGTAATAGCTACGGAATCTCAGGATTCAATAAGAGTGCTACTACAAATAATGCAAGTCTCTCTCTTTCGCCAGGTCATCAATTAGGGCTAAAGAAAGAAGCTTCTCTATCATCCTCATTTTACTCCGAAAGCTCCAGTACTATTAAGCAACCTTCGAAGCCGATTAATTCACCAATGTCGGCTACTGCACTTCTCCAACAAGCAGCCCAAATGGGTTCAACCAGATCAAGTACTACTCGTACTAACCCATCATTACTCCATGTAAACACATTTGGAGTACTCATGAGCACATCATCTTCTTCAGCTAATAACTCATCGAACCCTACAATCTTCGACCCGATGAATCGAACAAGATCGAGCGAATTACACCAATCTTTCACTGTGGGTGGTAGTCATGATCATCATGGATCAATGTTAAGCAGTAGTACGTCACCAAATAGTACTACTAATTTTGATGAGCTCGTGAGGCAAAGTACTGGCGGGAAAACATCAAGTCATGATCATCAGCTACATTTAGTACCATTATCAAAGCTTAATCAGAGTTCTAACAATTATAACAATAACGATGATGGAATAATGGGGAATAGTAGTTTGACAAGGGATTTTCTTGGCATGGGAGCTGGAGGAGTAGAAGATCTAGCTAAATTTGCAAATTACATGGCAGCTAGCTTGAGCCAATTCACGAGCAACCATTGA | 1698 | 42.46 | MQMMSGSTHAFSLPTSIGVGGFSQEKTTNPNPNPNPNPNPVVKKKRNQPGNPDPEAEVIALSPKTLMATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVPASNLHFGNDSASEAPIEPQSTMSQGFLGRGVQGVSGISHLGSGTFLREFSDHINASNSLGSPDHQQKARLLFGLSDEANNNNSHHHDRFSSMDQHLLGLPDHMGLQVASENVFDSSQMSSFGIGNSYGISGFNKSATTNNASLSLSPGHQLGLKKEASLSSSFYSESSSTIKQPSKPINSPMSATALLQQAAQMGSTRSSTTRTNPSLLHVNTFGVLMSTSSSSANNSSNPTIFDPMNRTRSSELHQSFTVGGSHDHHGSMLSSSTSPNSTTNFDELVRQSTGGKTSSHDHQLHLVPLSKLNQSSNNYNNNDDGIMGNSSLTRDFLGMGAGGVEDLAKFANYMAASLSQFTSNH | 565 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1468105 | 1470208 | - | Conep03aG0028800.1 | Cone3ag0282 | 433741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag0282 | 565 | MobiDBLite | consensus disorder prediction | 462 | 486 | - | - | |
Cone3ag0282 | 565 | FunFam | protein indeterminate-domain 12-like | 51 | 120 | - | - | |
Cone3ag0282 | 565 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 72 | 94 | IPR013087 | - | |
Cone3ag0282 | 565 | Gene3D | Classic Zinc Finger | 127 | 206 | - | - | |
Cone3ag0282 | 565 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 27 | 543 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cone3ag0282 | 565 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 148 | 172 | - | - | |
Cone3ag0282 | 565 | Gene3D | Classic Zinc Finger | 50 | 125 | - | - | |
Cone3ag0282 | 565 | Pfam | Zinc finger, C2H2 type | 72 | 94 | IPR013087 | - | |
Cone3ag0282 | 565 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 74 | 94 | IPR013087 | - | |
Cone3ag0282 | 565 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 175 | 213 | - | - | |
Cone3ag0282 | 565 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 127 | 206 | - | - | |
Cone3ag0282 | 565 | SMART | c2h2final6 | 149 | 169 | IPR013087 | - | |
Cone3ag0282 | 565 | SMART | c2h2final6 | 72 | 94 | IPR013087 | - | |
Cone3ag0282 | 565 | SMART | c2h2final6 | 114 | 144 | IPR013087 | - | |
Cone3ag0282 | 565 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cone3ag0282 | 565 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cone3ag0282 | 565 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 110 | 144 | - | - | |
Cone3ag0282 | 565 | SUPERFAMILY | beta-beta-alpha zinc fingers | 71 | 169 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0096 | Cone-Chr17:514643 | Cone3ag0282 | Cone-Chr3:1468105 | 3.01E-102 | dispersed | |
Cone19ag0670 | Cone-Chr19:5703595 | Cone3ag0282 | Cone-Chr3:1468105 | 6.98E-98 | dispersed | |
Cone20ag0834 | Cone-Chr20:5986896 | Cone3ag0282 | Cone-Chr3:1468105 | 1.06E-101 | dispersed | |
Cone3ag0282 | Cone-Chr3:1468105 | Cone3ag1314 | Cone-Chr3:32052872 | 2.70E-103 | dispersed | |
Cone10ag0256 | Cone-Chr10:1223433 | Cone3ag0282 | Cone-Chr3:1468105 | 0 | wgd | |
Cone11ag1288 | Cone-Chr11:9550552 | Cone3ag0282 | Cone-Chr3:1468105 | 1.19E-93 | wgd | |
Cone13ag1273 | Cone-Chr13:9597910 | Cone3ag0282 | Cone-Chr3:1468105 | 6.48E-112 | wgd | |
Cone18ag0291 | Cone-Chr18:1420318 | Cone3ag0282 | Cone-Chr3:1468105 | 1.75E-104 | wgd | |
Cone19ag1261 | Cone-Chr19:8626165 | Cone3ag0282 | Cone-Chr3:1468105 | 1.10E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45772 | PF00046 | Homeodomain | 9.40E-17 | CL0123 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag0282 | K25870 | - | vvi:100243175 | 442.965 |