Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0282 ATGCAAATGATGTCGGGTAGTACTCATGCCTTTTCTCTTCCTACGTCAATAGGAGTAGGAGGTTTCTCTCAAGAGAAAACCACAAACCCTAACCCCAATCCGAATCCGAATCCAAACCCAGTCGTCAAGAAGAAAAGAAATCAACCAGGAAACCCAGATCCAGAGGCTGAGGTTATTGCGTTATCTCCGAAAACGCTTATGGCGACCAACAGATTCATATGTGAAATTTGCAAGAAAGGGTTTCAAAGGGACCAGAATTTACAGCTTCATAGAAGGGGTCATAATCTTCCATGGAAGCTCCGACAAAGGACCAACAAAGAAGTTGTGAGGAAGAAGGTTTATATTTGCCCTGAGAAAACTTGTGTCCATCATGACCCATCAAGAGCTCTTGGAGACCTCACTGGAATCAAAAAGCATTTCAGCAGGAAACATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCTAAGAAATATGCAGTTCAATCCGACTGGAAAGCTCACTCTAAAACCTGTGGAACAAGAGAGTACAAGTGTGATTGTGGAACCCTTTTCTCCAGGAAAGACAGTTTCATAACGCATAGAGCTTTCTGCGATGCTTTAGCTGAAGAGAGTGCAAGATTAACTTCAGTTCCGGCCTCGAATTTGCATTTTGGAAATGATTCGGCAAGTGAAGCCCCAATCGAACCCCAATCCACTATGTCCCAGGGATTTCTCGGTCGAGGAGTTCAAGGTGTTTCCGGAATTTCCCACTTAGGCTCAGGAACATTTCTTCGAGAATTTAGCGATCATATAAATGCAAGCAACTCTCTCGGATCTCCTGATCACCAGCAAAAAGCCAGACTCTTATTTGGTTTGAGTGATGAAGCAAATAACAACAACTCCCATCATCATGATCGGTTCAGTTCCATGGATCAACATCTATTAGGTTTGCCCGACCACATGGGCCTGCAAGTGGCATCGGAAAATGTATTCGACTCTTCTCAAATGTCGAGTTTCGGAATTGGTAATAGCTACGGAATCTCAGGATTCAATAAGAGTGCTACTACAAATAATGCAAGTCTCTCTCTTTCGCCAGGTCATCAATTAGGGCTAAAGAAAGAAGCTTCTCTATCATCCTCATTTTACTCCGAAAGCTCCAGTACTATTAAGCAACCTTCGAAGCCGATTAATTCACCAATGTCGGCTACTGCACTTCTCCAACAAGCAGCCCAAATGGGTTCAACCAGATCAAGTACTACTCGTACTAACCCATCATTACTCCATGTAAACACATTTGGAGTACTCATGAGCACATCATCTTCTTCAGCTAATAACTCATCGAACCCTACAATCTTCGACCCGATGAATCGAACAAGATCGAGCGAATTACACCAATCTTTCACTGTGGGTGGTAGTCATGATCATCATGGATCAATGTTAAGCAGTAGTACGTCACCAAATAGTACTACTAATTTTGATGAGCTCGTGAGGCAAAGTACTGGCGGGAAAACATCAAGTCATGATCATCAGCTACATTTAGTACCATTATCAAAGCTTAATCAGAGTTCTAACAATTATAACAATAACGATGATGGAATAATGGGGAATAGTAGTTTGACAAGGGATTTTCTTGGCATGGGAGCTGGAGGAGTAGAAGATCTAGCTAAATTTGCAAATTACATGGCAGCTAGCTTGAGCCAATTCACGAGCAACCATTGA 1698 42.46 MQMMSGSTHAFSLPTSIGVGGFSQEKTTNPNPNPNPNPNPVVKKKRNQPGNPDPEAEVIALSPKTLMATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVPASNLHFGNDSASEAPIEPQSTMSQGFLGRGVQGVSGISHLGSGTFLREFSDHINASNSLGSPDHQQKARLLFGLSDEANNNNSHHHDRFSSMDQHLLGLPDHMGLQVASENVFDSSQMSSFGIGNSYGISGFNKSATTNNASLSLSPGHQLGLKKEASLSSSFYSESSSTIKQPSKPINSPMSATALLQQAAQMGSTRSSTTRTNPSLLHVNTFGVLMSTSSSSANNSSNPTIFDPMNRTRSSELHQSFTVGGSHDHHGSMLSSSTSPNSTTNFDELVRQSTGGKTSSHDHQLHLVPLSKLNQSSNNYNNNDDGIMGNSSLTRDFLGMGAGGVEDLAKFANYMAASLSQFTSNH 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1468105 1470208 - Conep03aG0028800.1 Cone3ag0282 433741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0282 565 MobiDBLite consensus disorder prediction 462 486 - -
Cone3ag0282 565 FunFam protein indeterminate-domain 12-like 51 120 - -
Cone3ag0282 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Cone3ag0282 565 Gene3D Classic Zinc Finger 127 206 - -
Cone3ag0282 565 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 543 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone3ag0282 565 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 148 172 - -
Cone3ag0282 565 Gene3D Classic Zinc Finger 50 125 - -
Cone3ag0282 565 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Cone3ag0282 565 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Cone3ag0282 565 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 175 213 - -
Cone3ag0282 565 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Cone3ag0282 565 SMART c2h2final6 149 169 IPR013087 -
Cone3ag0282 565 SMART c2h2final6 72 94 IPR013087 -
Cone3ag0282 565 SMART c2h2final6 114 144 IPR013087 -
Cone3ag0282 565 MobiDBLite consensus disorder prediction 1 55 - -
Cone3ag0282 565 MobiDBLite consensus disorder prediction 1 30 - -
Cone3ag0282 565 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 110 144 - -
Cone3ag0282 565 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0096 Cone-Chr17:514643 Cone3ag0282 Cone-Chr3:1468105 3.01E-102 dispersed
Cone19ag0670 Cone-Chr19:5703595 Cone3ag0282 Cone-Chr3:1468105 6.98E-98 dispersed
Cone20ag0834 Cone-Chr20:5986896 Cone3ag0282 Cone-Chr3:1468105 1.06E-101 dispersed
Cone3ag0282 Cone-Chr3:1468105 Cone3ag1314 Cone-Chr3:32052872 2.70E-103 dispersed
Cone10ag0256 Cone-Chr10:1223433 Cone3ag0282 Cone-Chr3:1468105 0 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone3ag0282 Cone-Chr3:1468105 1.19E-93 wgd
Cone13ag1273 Cone-Chr13:9597910 Cone3ag0282 Cone-Chr3:1468105 6.48E-112 wgd
Cone18ag0291 Cone-Chr18:1420318 Cone3ag0282 Cone-Chr3:1468105 1.75E-104 wgd
Cone19ag1261 Cone-Chr19:8626165 Cone3ag0282 Cone-Chr3:1468105 1.10E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45772 PF00046 Homeodomain 9.40E-17 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0282 K25870 - vvi:100243175 442.965