Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0290 ATGGCCGACGGTCCGGCGAGTCCCGGCGGAGGGAGTCACGAGAGTGGCGAGCATAGCCCTCGTTCCAATGTCCGAGAGCAGGATAGGTATCTTCCGATTGCGAATATCAGCCGGATTATGAAGAAAGCTCTCCCTGCCAACGGGAAGATCGCAAAGGATGCCAAGGAGACTGTGCAGGAATGTGTTTCTGAGTTCATTAGTTTCATCACCAGCGAGGCTAGTGATAAGTGCCAGAGAGAGAAGAGGAAGACGATTAACGGGGATGATCTGCTCTGGGCCATGGCCACTTTGGGGTTTGAGGACTATATTGATCCGCTTAAAGTATACCTGGCAAGATACAGAGAGATGGAGGGTGATACCAAGGGGTCAGCAAAGGGTGGGGAAGCTTCTGCTAGTAGAGATGCTCAAGCTCAACTTGGCCCAAATGCTCAGATTGCTCATCAAGGCTCTTTTACCCAAGGAATTAATTATGCAAATTCACAATAG 486 50.21 MADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREMEGDTKGSAKGGEASASRDAQAQLGPNAQIAHQGSFTQGINYANSQ 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1505735 1507756 - Conep03aG0029700.1 Cone3ag0290 433749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0290 161 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982(InterPro)
Cone3ag0290 161 Gene3D Histone, subunit A 16 152 IPR009072 GO:0046982(InterPro)
Cone3ag0290 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cone3ag0290 161 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0290 161 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cone3ag0290 161 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cone3ag0290 161 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cone3ag0290 161 FunFam Nuclear transcription factor Y subunit B-3 19 144 - -
Cone3ag0290 161 MobiDBLite consensus disorder prediction 1 28 - -
Cone3ag0290 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone3ag0290 161 MobiDBLite consensus disorder prediction 135 161 - -
Cone3ag0290 161 MobiDBLite consensus disorder prediction 119 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0290 K08065 - - gmx:100820170 272.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1217 Cone-Chr14:9905417 Cone3ag0290 Cone-Chr3:1505735 1.31E-56 dispersed
Cone15ag1238 Cone-Chr15:9791392 Cone3ag0290 Cone-Chr3:1505735 8.04E-55 dispersed
Cone1ag0062 Cone-Chr1:313120 Cone3ag0290 Cone-Chr3:1505735 9.61E-49 dispersed
Cone3ag0290 Cone-Chr3:1505735 Cone8ag1366 Cone-Chr8:10907603 3.96E-58 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone3ag0290 Cone-Chr3:1505735 1.38E-68 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone3ag0290 Cone-Chr3:1505735 3.22E-112 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone3ag0290 Cone-Chr3:1505735 1.80E-82 wgd
Cone19ag1279 Cone-Chr19:8705820 Cone3ag0290 Cone-Chr3:1505735 4.16E-99 wgd
Cone3ag0290 Cone-Chr3:1505735 Cone5ag0323 Cone-Chr5:1363391 4.50E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag1798 . 4 224 CCAAT-HAP3 Transcription Factor Family AT5G47670 54.4 3.6e-56 215.7
Cone1ag0062 . 1 224 CCAAT-HAP3 Transcription Factor Family AT5G47670 52.3 3.0e-55 212.6
Cone15ag1243 . 54 154 CCAAT-HAP3 Transcription Factor Family AT5G47670 86.1 2.3e-47 186.4
Cone14ag1222 . 1 90 CCAAT-HAP3 Transcription Factor Family AT5G47670 87.8 7.3e-41 164.9
Cone8ag1366 . 8 130 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.9 4.9e-37 152.1
Cone15ag1238 . 15 118 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.4 4.9e-37 152.1
Cone19ag1279 . 25 149 CCAAT-HAP3 Transcription Factor Family AT5G47670 54.8 1.4e-36 150.6
Cone15ag1243 . 56 183 CCAAT-HAP3 Transcription Factor Family AT1G21970 71.9 1.9e-49 193.4
Cone5ag1798 . 21 147 CCAAT-HAP3 Transcription Factor Family AT1G21970 68.5 1.8e-47 186.8
Cone1ag0062 . 1 147 CCAAT-HAP3 Transcription Factor Family AT1G21970 59.1 2.0e-46 183.3
Cone14ag1222 . 1 164 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.3 2.7e-43 172.9
Cone10ag0264 . 9 133 CCAAT-HAP3 Transcription Factor Family AT1G21970 55.5 1.4e-36 150.6
Cone3ag0290 . 9 133 CCAAT-HAP3 Transcription Factor Family AT1G21970 55.5 1.9e-36 150.2
Cone12ag1312 . 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.5 2.0e-53 206.1
Cone8ag1366 . 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.7 3.7e-52 201.8
Cone14ag1217 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.2 8.3e-52 200.7
Cone15ag1238 . 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.9 7.0e-51 197.6
Cone5ag0323 . 11 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.2 6.1e-47 184.5
Cone12ag0762 . 24 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.4 8.8e-46 180.6
Cone8ag0794 . 24 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.4 2.6e-45 179.1
Cone3ag0290 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 7.5e-45 177.6
Cone10ag0264 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 7.5e-45 177.6
Cone19ag1279 . 25 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.0 2.2e-44 176.0
Cone1ag1336 . 11 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 3.5e-42 168.7
Cone13ag1293 . 10 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.9 3.5e-42 168.7
Cone17ag0499 . 55 164 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.3 1.8e-38 156.4
Cone20ag0927 . 40 147 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.5 6.8e-38 154.5
Cone5ag1798 . 44 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.4 1.2e-37 153.7
Cone1ag0062 . 44 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.4 7.5e-37 151.0
Cone3ag0792 . 5 105 CCAAT-HAP3 Transcription Factor Family AT1G09030 77.7 2.8e-40 162.2
Cone10ag0770 . 5 107 CCAAT-HAP3 Transcription Factor Family AT1G09030 73.8 1.5e-38 156.4
Cone3ag0290 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.0 9.6e-50 193.7
Cone10ag0264 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.0 9.6e-50 193.7
Cone19ag1279 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.3 1.4e-48 189.9
Cone5ag0323 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.6 2.0e-47 186.0
Cone13ag1293 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.6 9.9e-47 183.7
Cone1ag1336 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.9 1.6e-44 176.4
Cone15ag1238 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.8 2.5e-42 169.1
Cone12ag1312 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 7.4e-42 167.5
Cone14ag1217 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.8 7.4e-42 167.5
Cone8ag1366 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 1.3e-41 166.8
Cone12ag0762 . 8 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.9 4.8e-41 164.9
Cone8ag0794 . 8 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.9 8.1e-41 164.1
Cone17ag0499 . 45 146 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.5 5.8e-39 157.9
Cone20ag0927 . 39 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.9 2.2e-38 156.0
Cone20ag0927 . 49 147 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.8 1.8e-43 172.9
Cone17ag0499 . 52 149 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.7 2.4e-43 172.6
Cone14ag0770 . 18 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.8 2.7e-39 159.1
Cone15ag1238 . 19 118 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 2.7e-39 159.1
Cone14ag1217 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 1.4e-38 156.8
Cone12ag0762 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.2e-38 154.8
Cone8ag0794 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 1.5e-37 153.3
Cone8ag1366 . 18 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.6 2.0e-37 152.9
Cone12ag1312 . 18 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.6 2.0e-37 152.9
Cone5ag0323 . 26 132 CCAAT-HAP3 Transcription Factor Family AT2G47810 64.5 3.3e-37 152.1
Cone3ag0290 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.1 4.4e-37 151.8
Cone10ag0264 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.1 4.4e-37 151.8
Cone10ag0770 . 5 106 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.7 9.7e-37 150.6
Cone10ag0264 . 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 9.4e-62 233.8
Cone3ag0290 . 1 151 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.8 8.8e-60 227.3
Cone19ag1279 . 7 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.3 4.4e-59 224.9
Cone5ag0323 . 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.8 1.3e-55 213.4
Cone13ag1293 . 1 128 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.5 3.7e-50 195.3
Cone1ag1336 . 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 3.2e-49 192.2
Cone14ag1217 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.4 6.8e-44 174.5
Cone15ag1238 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.4 8.9e-44 174.1
Cone12ag1312 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.2 4.4e-43 171.8
Cone8ag1366 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.2 5.8e-43 171.4
Cone12ag0762 . 27 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.6 6.0e-40 161.4
Cone8ag0794 . 27 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.6 1.7e-39 159.8
Cone20ag0927 . 38 151 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.2 4.3e-38 155.2
Cone17ag0499 . 40 153 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.2 5.6e-38 154.8
Cone5ag1798 . 45 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.3 9.5e-38 154.1
Cone1ag0062 . 30 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 59.2 4.7e-37 151.8
Cone8ag0794 . 14 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.9 1.5e-45 180.3
Cone12ag0762 . 14 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.9 2.0e-45 179.9
Cone3ag0290 . 4 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.2 5.5e-43 171.8
Cone10ag0264 . 4 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.2 5.5e-43 171.8
Cone19ag1279 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.9 7.1e-43 171.4
Cone14ag1217 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 3.5e-42 169.1
Cone8ag1366 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.5 6.1e-42 168.3
Cone12ag1312 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.5 6.1e-42 168.3
Cone15ag1238 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 6.1e-42 168.3
Cone9ag1230 . 1 162 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.1 8.7e-41 164.5
Cone13ag1293 . 7 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.9 4.3e-40 162.2
Cone5ag0323 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.8 5.7e-40 161.8
Cone17ag0499 . 55 149 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 6.9e-38 154.8
Cone20ag0927 . 53 151 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.7 6.9e-38 154.8
Cone1ag1336 . 26 124 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.7 1.2e-37 154.1
Cone14ag0770 . 8 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.3 2.0e-37 153.3
Cone14ag1217 . 1 137 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.4 2.4e-50 196.1
Cone15ag1238 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 1.2e-49 193.7
Cone8ag1366 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.0 1.0e-48 190.7
Cone12ag1312 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 5.0e-48 188.3
Cone3ag0290 . 11 135 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.8 1.2e-44 177.2
Cone10ag0264 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.3 1.5e-44 176.8
Cone12ag0762 . 22 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.6 1.5e-44 176.8
Cone19ag1279 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.7 3.4e-44 175.6
Cone8ag0794 . 22 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 4.4e-44 175.3
Cone5ag0323 . 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.3 9.8e-44 174.1
Cone13ag1293 . 19 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.6 8.3e-43 171.0
Cone1ag1336 . 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 5.4e-42 168.3
Cone17ag0499 . 55 149 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.9 1.5e-39 160.2
Cone20ag0927 . 48 147 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.0 1.9e-39 159.8
Cone5ag1798 . 37 158 CCAAT-HAP3 Transcription Factor Family AT5G47640 60.0 5.5e-39 158.3
Cone1ag0062 . 46 149 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 1.4e-37 153.7
Cone3ag0290 . 12 161 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.0 2.8e-61 232.3
Cone10ag0264 . 12 161 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.0 3.7e-61 231.9
Cone19ag1279 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.7 5.8e-59 224.6
Cone5ag0323 . 1 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 3.9e-55 211.8
Cone13ag1293 . 12 130 CCAAT-HAP3 Transcription Factor Family AT3G53340 84.3 4.5e-51 198.4
Cone1ag1336 . 12 133 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 4.6e-48 188.3
Cone8ag1366 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 1.4e-44 176.8
Cone12ag1312 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 1.4e-44 176.8
Cone14ag1217 . 6 117 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.1 2.6e-43 172.6
Cone15ag1238 . 6 117 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.1 3.4e-43 172.2
Cone12ag0762 . 7 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.8 1.6e-40 163.3
Cone8ag0794 . 27 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.6 1.4e-39 160.2
Cone20ag0927 . 38 151 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.8 2.3e-39 159.5
Cone17ag0499 . 40 153 CCAAT-HAP3 Transcription Factor Family AT3G53340 64.0 2.0e-38 156.4
Cone5ag1798 . 45 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 68.3 1.3e-37 153.7
Cone1ag0062 . 45 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 67.3 8.2e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45774 PF13947 GUB_WAK_bind 1.10E-09 No_clan Cone TF