Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0290 ATGGCCGACGGTCCGGCGAGTCCCGGCGGAGGGAGTCACGAGAGTGGCGAGCATAGCCCTCGTTCCAATGTCCGAGAGCAGGATAGGTATCTTCCGATTGCGAATATCAGCCGGATTATGAAGAAAGCTCTCCCTGCCAACGGGAAGATCGCAAAGGATGCCAAGGAGACTGTGCAGGAATGTGTTTCTGAGTTCATTAGTTTCATCACCAGCGAGGCTAGTGATAAGTGCCAGAGAGAGAAGAGGAAGACGATTAACGGGGATGATCTGCTCTGGGCCATGGCCACTTTGGGGTTTGAGGACTATATTGATCCGCTTAAAGTATACCTGGCAAGATACAGAGAGATGGAGGGTGATACCAAGGGGTCAGCAAAGGGTGGGGAAGCTTCTGCTAGTAGAGATGCTCAAGCTCAACTTGGCCCAAATGCTCAGATTGCTCATCAAGGCTCTTTTACCCAAGGAATTAATTATGCAAATTCACAATAG 486 50.21 MADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREMEGDTKGSAKGGEASASRDAQAQLGPNAQIAHQGSFTQGINYANSQ 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1505735 1507756 - Conep03aG0029700.1 Cone3ag0290 433749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0290 161 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982(InterPro)
Cone3ag0290 161 Gene3D Histone, subunit A 16 152 IPR009072 GO:0046982(InterPro)
Cone3ag0290 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cone3ag0290 161 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0290 161 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cone3ag0290 161 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cone3ag0290 161 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cone3ag0290 161 FunFam Nuclear transcription factor Y subunit B-3 19 144 - -
Cone3ag0290 161 MobiDBLite consensus disorder prediction 1 28 - -
Cone3ag0290 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone3ag0290 161 MobiDBLite consensus disorder prediction 135 161 - -
Cone3ag0290 161 MobiDBLite consensus disorder prediction 119 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1217 Cone-Chr14:9905417 Cone3ag0290 Cone-Chr3:1505735 1.31E-56 dispersed
Cone15ag1238 Cone-Chr15:9791392 Cone3ag0290 Cone-Chr3:1505735 8.04E-55 dispersed
Cone1ag0062 Cone-Chr1:313120 Cone3ag0290 Cone-Chr3:1505735 9.61E-49 dispersed
Cone3ag0290 Cone-Chr3:1505735 Cone8ag1366 Cone-Chr8:10907603 3.96E-58 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone3ag0290 Cone-Chr3:1505735 1.38E-68 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone3ag0290 Cone-Chr3:1505735 3.22E-112 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone3ag0290 Cone-Chr3:1505735 1.80E-82 wgd
Cone19ag1279 Cone-Chr19:8705820 Cone3ag0290 Cone-Chr3:1505735 4.16E-99 wgd
Cone3ag0290 Cone-Chr3:1505735 Cone5ag0323 Cone-Chr5:1363391 4.50E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45774 PF13947 GUB_WAK_bind 1.10E-09 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0290 K08065 - gmx:100820170 272.707