Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0291 ATGTTGGATCTCAATCTCGACGTCGTTTACGACGATTCGGCTTCTGCTTCACCCGAGGTGGTTACGGAGAAGCTCGTGCAGCTTTCTAGTACTCAAATGGAGAACTCTGCCGGAAGCTTAAATTCATCCTCCGTTTTGAACACTGAGCCCTCCTCCAACACTACCGGTGACGAGGACTCTACCTCAAACACCGACAATGTTGTTGCCTTGCACTCTTTTGGCATCCTGAACAAAGACGACATTGTCGGTGTCCGTACGATCCAGCTTTTCCCTGTTTTCGGCGAGTCTTCTTCCTCTCCATGTACGCAGAAGCAGCAATGGTTGGAACTCTCTGCGTTGGAGAAGACGCACTGTAATGGACCTGCGGAGCAGGTGATCATAGTGCAGCCGCAACAGCGTCAGCCATTGAAGAAGAGTCGACGTGGACCGAGGTCAAGAAGCTCGCAGTATCGTGGAGTTACGTTTTACAGAAGAACTGGAAGATGGGAATCACATATTTGGGATTGTGGAAAGCAGGTCTACTTGGGAGGTTTTGACACTGCCCATTCTGCGGCTAGGGCTTATGATAGAGCTGCGATCAAGTTCCGTGGACTCGATGCTGACATCAACTTTGATATCAATGACTATGAAGAAGAAATTAAGCAGATGAGTAAGTTTACTAAGGAGGAATTTGTGCACATTCTTCGCCGCCAGAGTTCCGGATTTTCAAGGGGGAGTTCGAAATACAGAGGAGTTACTCTCCACAAATGTGGCCGATGGGAAGCTCGTATGGGACAGTTTCTTGGCAAGAAGTACATATATCTTGGACTTTTTGATAGCGAGATAGACGCTGCAAGAGCCTATGACAAGGCTGCAATAAAATGCAATGGTCGGGAAGCCGTTACCAACTTTGAGCCAAGCTCGTATCATGGGGAGTTAGCTTCTGAAGTTGAGCATGGAGCAATCAACCAAGATCTTGACTTGAACTTGGGAATAGCTCCTCCTTATCTCCCTGATGGCCTGAAGGAAGAAATCAATGGCAGTAGTATTCTTCTTCACGGCGGCTCTGATAATTCCCCTACCGATAGGAGAGCAAGGTTTGACAACCGAATGAGGGCTGCTCAGCTTTATGTCCCTTCAGTAACACCGAAGCACCATTCTGTCTATAATGGTGTTAATTCAAACTTCTTTCCCATCTTTCAGGAAAGAGCAATGGAGAAGACGATGGAGGTTGACTTGTACGCGGACTGGGCCCGGAAAATTCCAGGCCCGTACGGCGGAGCAATTCCGTCACCGATCTTCGCTGCTGCAGCATCATCAGGATTCCATTCAACTAGTGCTACTTTAAATTCAGCTTCTGCCAATAATAGTGTTGGTCAACTCCATGTCCCAAACACAACACTCCCCCACCATTTTCCTCCTCTAACCAACACCAACTTGGCCTATTTCTTCTGCAAGAGCTGA 1443 47.82 MLDLNLDVVYDDSASASPEVVTEKLVQLSSTQMENSAGSLNSSSVLNTEPSSNTTGDEDSTSNTDNVVALHSFGILNKDDIVGVRTIQLFPVFGESSSSPCTQKQQWLELSALEKTHCNGPAEQVIIVQPQQRQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGLDADINFDINDYEEEIKQMSKFTKEEFVHILRRQSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIDAARAYDKAAIKCNGREAVTNFEPSSYHGELASEVEHGAINQDLDLNLGIAPPYLPDGLKEEINGSSILLHGGSDNSPTDRRARFDNRMRAAQLYVPSVTPKHHSVYNGVNSNFFPIFQERAMEKTMEVDLYADWARKIPGPYGGAIPSPIFAAAASSGFHSTSATLNSASANNSVGQLHVPNTTLPHHFPPLTNTNLAYFFCKS 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1509147 1511553 - Conep03aG0029800.1 Cone3ag0291 433750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0291 480 ProSiteProfiles AP2/ERF domain profile. 241 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 CDD AP2 149 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 SMART rav1_2 241 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 SMART rav1_2 149 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 FunFam AP2-like ethylene-responsive transcription factor 148 207 - -
Cone3ag0291 480 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677(InterPro)
Cone3ag0291 480 Pfam AP2 domain 240 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 Pfam AP2 domain 149 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 CDD AP2 240 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 332 - -
Cone3ag0291 480 MobiDBLite consensus disorder prediction 32 63 - -
Cone3ag0291 480 MobiDBLite consensus disorder prediction 131 150 - -
Cone3ag0291 480 ProSiteProfiles AP2/ERF domain profile. 149 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 SUPERFAMILY DNA-binding domain 240 299 IPR016177 GO:0003677(InterPro)
Cone3ag0291 480 Gene3D AP2/ERF domain 240 299 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 Gene3D AP2/ERF domain 148 207 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 PRINTS Ethylene responsive element binding protein signature 242 253 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0291 480 FunFam AP2-like ethylene-responsive transcription factor 240 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0291 Cone-Chr3:1509147 Cone8ag0138 Cone-Chr8:727322 2.40E-110 dispersed
Cone1ag1335 Cone-Chr1:56459580 Cone3ag0291 Cone-Chr3:1509147 6.23E-61 wgd
Cone1ag0696 Cone-Chr1:6470469 Cone3ag0291 Cone-Chr3:1509147 2.89E-135 wgd
Cone10ag0265 Cone-Chr10:1265019 Cone3ag0291 Cone-Chr3:1509147 2.16E-284 wgd
Cone3ag0291 Cone-Chr3:1509147 Cone5ag0321 Cone-Chr5:1359024 2.83E-63 wgd
Cone3ag0291 Cone-Chr3:1509147 Cone5ag1204 Cone-Chr5:5461638 1.55E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45775 PF07714 PK_Tyr_Ser-Thr 2.90E-16 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0291 K09284 - csv:101211242 471.855