Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0296 ATGGATGAACACAAAATGTTGCAAGAACCAAATATATGCTTGCCAAATGAGAAGAAAAGAAAGAACGAAGTTTTATCTAGGGAAGATGATGAGTTGATTAGAAGTAGTAGAACTGCAAAAGATGTGATTAGTAATGGAGAAGGAGAGGGTGTGTGGGGTCAGCGTGTTGTACAAATCTCGAAAAAACAGCAGCAGCTTCTTCATCAACGGCCAATCATTTGTTGGGAGAGATTTCTACACCGTAGATCCCTCAAAGTGATGTTAGTTGAAAGCGATGATTGTACTCGTCAAATTGTTACTGCCCTTCTTCGTAATTGCCATTATGAAGTTTTCGAGGTTGCAAATGGATTACAAGCATGGAAGATTCTAGAAGATCTTACCAATAATATCGATCTTGTCTTAACGGAGGTGGTCATGCCCTGTGTATCTGGAATCTCTCTGTTATGCAAGATCATGAGCCATAAAACACGCAAGAACGTTCCCGTCATTATGATGTCATCTCACGACTCAATGGGTTTAGTCTTCAATTGTTTGTCAAGGGGCGCTGTTGACTTTTTAGTGAAGCCCATTCGAAAGAACGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGAAGATGTCATTGTTCTAGCAGCAGTGGAAGTGTAAGTGGTACTAATACCCAGAAGTCTGTAAAGTCGAAACCGGTTGGACAATCAGGCAACGACAGTGAAAGTGATGACGAGGAAGTGAATGAGAGCATTGGTTTGAATGTTGGGTGTGGAAGTGACAATGGGAGTGGCAGTCAGAGCTCTTGGACAAAACAAGCAATTGAAGTGGAAGTTGAAGTCCCTCAACTGATCTCTCCTTGTTCTGATAATAGTACCTGTGCTCAAGTTGTCCACTCAAAGGCCAAAACACTTTTTAACCACGTTGACCCCACTCCTTCCCCGAACTGGTCTCATCAACATAAGCAACAAGAACAACTTGATGATATTGCAACAAGTAAAGAGTTAGACTTACAGCTTCAACTCTCAAATCCCGAACTTCTCAGCACAAAACCAAAAACTGTGGAAGAATCTATGAGTCTACCCGGAAAGCTAAAATATGAATACAGTGATCTAAAAGGTCTTCCCGTGAATACTATAGATTGTCAGATATATTGTGCAGAGATTGAGGCTCAAAACAAAAATCTCGCCATTGCGGATTCTGAATTACTACAACCATCTCTTGAGCTCAGTTTGAAAAGGCTCGGAGGAGGTAAAGACGCTGGACTAGATTATCGTAATGGTCTAAGACCATTACTACAACAAAACAATTCTACTGCTTTTTCGAGGTATAATGGAATAACAAGCTTTAATAAAAGTGATACCTTAGAAGTTTTAAATAAAAAATCGAATGTTAATATTCTATCCCACTCTCTTAGCAGTCCTCTGAATCAAGGGTCGAATGAAGCAAGCAATAACATGGACATGGGGTCCACAACTAATAATGCCTTCTTCACCAAATCCCGATCATCTCTATTCCATTGTATAAAAAATGAACCTTTTCCTATACATCCACCTCAGCAAATCCCGATCGTCCAATCAGAGTCAAAGGTTGAGCGGTCAATGAATTTGTTGGGTGGTCGGGTTGAAGGTCAAGCTGCAAATTACAGTGTCAATGGAAGTGGTTCTGGGAGCAATGGTCGAAATGGCAGCGCAATTGCAGTTAATGCTGGGGTGATGAATATGGAAAGTGATAACAGAATTGGCCGGAGAAGTGCTTATGGATTCAGAGTTGAACACAAGACGTCTCATAGAGAAGCGACTTTGACCAAGTTTAGGCAAAAGAGAAAGGAGAGATGCTTTCAGAGAAAGGTTCGCTATCAAAACCGGAAGAGACTAGCAGAACAAAGGCCTCGGATCCGAGGACAATTTGTGAGAAAATACCACATAGAGTGA 1920 41.15 MDEHKMLQEPNICLPNEKKRKNEVLSREDDELIRSSRTAKDVISNGEGEGVWGQRVVQISKKQQQLLHQRPIICWERFLHRRSLKVMLVESDDCTRQIVTALLRNCHYEVFEVANGLQAWKILEDLTNNIDLVLTEVVMPCVSGISLLCKIMSHKTRKNVPVIMMSSHDSMGLVFNCLSRGAVDFLVKPIRKNELKNLWQHVWRRCHCSSSSGSVSGTNTQKSVKSKPVGQSGNDSESDDEEVNESIGLNVGCGSDNGSGSQSSWTKQAIEVEVEVPQLISPCSDNSTCAQVVHSKAKTLFNHVDPTPSPNWSHQHKQQEQLDDIATSKELDLQLQLSNPELLSTKPKTVEESMSLPGKLKYEYSDLKGLPVNTIDCQIYCAEIEAQNKNLAIADSELLQPSLELSLKRLGGGKDAGLDYRNGLRPLLQQNNSTAFSRYNGITSFNKSDTLEVLNKKSNVNILSHSLSSPLNQGSNEASNNMDMGSTTNNAFFTKSRSSLFHCIKNEPFPIHPPQQIPIVQSESKVERSMNLLGGRVEGQAANYSVNGSGSGSNGRNGSAIAVNAGVMNMESDNRIGRRSAYGFRVEHKTSHREATLTKFRQKRKERCFQRKVRYQNRKRLAEQRPRIRGQFVRKYHIE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1530099 1533603 + Conep03aG0030300.1 Cone3ag0296 433755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0296 639 MobiDBLite consensus disorder prediction 250 265 - -
Cone3ag0296 639 SUPERFAMILY CheY-like 83 208 IPR011006 -
Cone3ag0296 639 MobiDBLite consensus disorder prediction 209 233 - -
Cone3ag0296 639 MobiDBLite consensus disorder prediction 209 265 - -
Cone3ag0296 639 PANTHER TWO-COMPONENT RESPONSE REGULATOR 81 353 IPR045279 GO:0009736(InterPro)
Cone3ag0296 639 SMART REC_2 84 199 IPR001789 GO:0000160(InterPro)
Cone3ag0296 639 ProSiteProfiles CCT domain profile. 593 635 IPR010402 GO:0005515(InterPro)
Cone3ag0296 639 FunFam Two-component response regulator-like PRR37 84 242 - -
Cone3ag0296 639 Gene3D - 83 248 - -
Cone3ag0296 639 Pfam Response regulator receiver domain 86 197 IPR001789 GO:0000160(InterPro)
Cone3ag0296 639 ProSiteProfiles Response regulatory domain profile. 85 203 IPR001789 GO:0000160(InterPro)
Cone3ag0296 639 Pfam CCT motif 593 635 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0978 Cone-Chr18:7213447 Cone3ag0296 Cone-Chr3:1530099 2.78E-42 dispersed
Cone1ag1021 Cone-Chr1:55118294 Cone3ag0296 Cone-Chr3:1530099 4.89E-46 dispersed
Cone3ag0296 Cone-Chr3:1530099 Cone5ag0728 Cone-Chr5:3135786 1.55E-45 dispersed
Cone10ag0269 Cone-Chr10:1282359 Cone3ag0296 Cone-Chr3:1530099 9.03E-262 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone3ag0296 Cone-Chr3:1530099 2.61E-77 wgd
Cone11ag1274 Cone-Chr11:9470078 Cone3ag0296 Cone-Chr3:1530099 5.05E-80 wgd
Cone13ag1299 Cone-Chr13:9702566 Cone3ag0296 Cone-Chr3:1530099 2.81E-18 wgd
Cone18ag0310 Cone-Chr18:1521944 Cone3ag0296 Cone-Chr3:1530099 3.82E-79 wgd
Cone19ag1288 Cone-Chr19:8731478 Cone3ag0296 Cone-Chr3:1530099 1.26E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45777 PF04640 PLATZ 1.70E-29 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0296 K12129 - csv:101210765 519.235