Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0297 ATGGATCCGAAAGAAGGAGAGAGAGTAGTGGTTTCAAAACCAGTAGCATCAAGACCCAGTTACTCTAATTTCAGGTCCTTCTCCGAGCTCCTTTCTGGCGCCATTAATTCCTCTCCCCCTAATTCTTCTTCGGAAATTACTGCCCCCGCCATTCGACCGAAAACCATCCGGTTGAAGCCAACCCCTGCTCATCACCCTCCAACAGGGCTCATTTCTTCTCAGGCTGCAATCTCAGAATCAGCAGATGCCGATAACACTGATTCCGAAAGCAATAAGTCTGCCGTTGTATTCAAACCACAAGCTAAACTCGTGTCAAGAAGAACCGTTTCTCTCTTGGCAAATATGGGAAACTTTAGCCCTAATAGTCCTAATAACCGTCAGCAAACTCCACACCATACAGTTCCACAAACAACCAATGCATCCATAGAGTCATCAAAGATTGTGGAAGAGGATCCAAAATCACTACAACATCCTATGGCTCACTGTGATAGACCGTCATATGATGGATATAACTGGAGGAAATATGGCCAAAAGCAAGTCAAAGGAAGTGAGTACCCGAGGAGTTACTATAAATGTACGCATCCAAATTGTCCGGTGAAAAAGAAGGTGGAGAGATCATTAGACGGGCAAATTGCGGAGATTGTTTACAAGGGGGAACATAATCATTCCAAGCCCCAACCTCCTAACCGGAACTCGTCGGTCCTACAAGGGACAGGATTGGGTCTAGACGGGGTCGGTCAAGAGACCAACAACAATCCGGTTTGGAGTAATTTTCCAAATGAGAAGAATGATGGGTCGGAAGGAAGAATAGAAAACAGGAATGAAGTAGGATCATCGAATCCCGAAAAAGCTACACTGCCTTATGAATCCGTTCTGGAGAATTCTTGTGGTGTTAGGGGTGAATGCGAGGAACCACATGGCAAGGGGGCTGAGGTTGAGGAGGATGAGCCGAGGAGTAAGAGAAGGAAAGGTGAGAATCATAATCAATCCAGTGAAGCAGGGATATCGGGCGAAGGCGTGGAGCCTCGTATTATCGTTCAGAATTCGAATGATTCTGAGATCCTAGGTGATGGATTCCGATGGAGGAAGTATGGGCAGAAGGTTGTCAAAGGAAATCCATATCCAAGAAGTTACTACAGATGTACGAGTCCAAAATGCAATGTACGGAAGCATGTGGAAAGAGCATCGGACGATCCGAAAGCTTTCATAACAACTTACGAGGGAAAGCACAACCACGACATGCCTACCACCAAAAATACACATCCACCTGTGGCTGGCTCCGAAATGGATTCAAAGGCTCAATCGAGTAAACACAGACAATGA 1323 45.88 MDPKEGERVVVSKPVASRPSYSNFRSFSELLSGAINSSPPNSSSEITAPAIRPKTIRLKPTPAHHPPTGLISSQAAISESADADNTDSESNKSAVVFKPQAKLVSRRTVSLLANMGNFSPNSPNNRQQTPHHTVPQTTNASIESSKIVEEDPKSLQHPMAHCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSLDGQIAEIVYKGEHNHSKPQPPNRNSSVLQGTGLGLDGVGQETNNNPVWSNFPNEKNDGSEGRIENRNEVGSSNPEKATLPYESVLENSCGVRGECEEPHGKGAEVEEDEPRSKRRKGENHNQSSEAGISGEGVEPRIIVQNSNDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTSPKCNVRKHVERASDDPKAFITTYEGKHNHDMPTTKNTHPPVAGSEMDSKAQSSKHRQ 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1535791 1538482 + Conep03aG0030400.1 Cone3ag0297 433756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0297 440 Gene3D WRKY domain 155 226 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 Gene3D WRKY domain 340 416 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 MobiDBLite consensus disorder prediction 219 343 - -
Cone3ag0297 440 ProSiteProfiles WRKY domain profile. 168 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 MobiDBLite consensus disorder prediction 407 440 - -
Cone3ag0297 440 MobiDBLite consensus disorder prediction 33 98 - -
Cone3ag0297 440 FunFam WRKY transcription factor 57 341 415 - -
Cone3ag0297 440 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 93 421 IPR044810 GO:0003700(InterPro)
Cone3ag0297 440 MobiDBLite consensus disorder prediction 33 49 - -
Cone3ag0297 440 ProSiteProfiles WRKY domain profile. 350 415 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 Pfam WRKY DNA -binding domain 357 413 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 Pfam WRKY DNA -binding domain 168 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 SUPERFAMILY WRKY DNA-binding domain 350 415 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 MobiDBLite consensus disorder prediction 225 263 - -
Cone3ag0297 440 SUPERFAMILY WRKY DNA-binding domain 165 225 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 FunFam WRKY transcription factor 155 226 - -
Cone3ag0297 440 MobiDBLite consensus disorder prediction 118 141 - -
Cone3ag0297 440 MobiDBLite consensus disorder prediction 67 95 - -
Cone3ag0297 440 SMART WRKY_cls 355 414 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 SMART WRKY_cls 166 224 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0297 440 MobiDBLite consensus disorder prediction 299 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0297 Cone-Chr3:1535791 Cone7ag0070 Cone-Chr7:297307 6.66E-75 dispersed
Cone10ag0270 Cone-Chr10:1287334 Cone3ag0297 Cone-Chr3:1535791 2.89E-267 wgd
Cone13ag1300 Cone-Chr13:9709099 Cone3ag0297 Cone-Chr3:1535791 7.69E-137 wgd
Cone19ag1289 Cone-Chr19:8736402 Cone3ag0297 Cone-Chr3:1535791 5.09E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45778 PF14226 DIOX_N 1.10E-24 CL0029 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0297 - - - 0.0