Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0298 ATGGGATGGATTCCTTGTTCCGGAAATTCGAACAGCAAATCCAAGTCCAAAAAGAGTAAGAACATAGAAGTTATCAACAAAAACCCAGCTGATCCGATCAAACCCACCTCAGATAATAAGTTAAAGAGAAGCTCTTCCTTTAGTTCAAAGGAAGGTTCTAAAAACGGAGGGTCCAATCACATTGCGGCTAAGACTTTCGCCTTCCGTGAGCTGGCCTCTGCCACCAGAAACTTCCGGGAAGAATGTCTTTTGGGCAAGGGTGGTTTTGGTAGAGTCTATAAAGGTCATTTGGAATGTATAAACCAGGTTGTAGCTGTCAAGCAACTGGATCGTAATGGGTTACAAGGAAACAGAGAATTCCTCGTAGAAGTGTTAATGTTAAGTCTATTACATCACCCTAACCTTGTCAATCTCATTGGTTATTGTGCTGATGGAGATCAACGCCTTCTTGTCTATGAATACATGTCTCTAGGATCTCTAGAAGACCATTTATACGAAATTTGGCCTGGTACAAATCATCTAGATTGGAATACGAGGATGAAAGTAGCAGCAGGAGCAGCCAAGGGATTGGAGTATTTGCATGACAAAGCTAACCCTCCTGTTATCTATCGGGATTTGAAATGTTCCAACATTTTGCTTGATGAAGGTTTTCATCCGAAATTATCTGATTTTGGGCTAGCAAAGCTGGGGCCCGTCGGGGACAATACCCATGTATCGACTAGAGTTATGGGCACTTATGGATATTGTGCTCCTGAGTATGCTATGACCGGTCAATTGACTTTGAAATCAGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATCATTACAGGTAGAAAAGCGATTGATGATTCGAAAGTTGCTGGAGAGCAGAATCTGGTTGCTTGGGCGAAGCCAATGTTCAAAGACAGAAGGAAATTTTCACAAATGGCGGATCCGATGCTGAAAGGTCATTTTCCTCCAAGAGGGTTATACCAAGCTCTTGCTATAGCAGCAATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTCATAGCTGATGTTGTCACAGCCTTGTCTTATCTTGCAGCCCAAAGATACGATCCATCTACCGAACCGGCCCAAAGTTCCTTCCTTTCGCCCGGTACTCCCCCTAGAGGCTATCGGAATGGAGCTAGAAAGCTAAGTGTTGGAAGCACAAATGGAAGGACTCAAACAAAAAGATGGAGTTGA 1212 43.23 MGWIPCSGNSNSKSKSKKSKNIEVINKNPADPIKPTSDNKLKRSSSFSSKEGSKNGGSNHIAAKTFAFRELASATRNFREECLLGKGGFGRVYKGHLECINQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLYEIWPGTNHLDWNTRMKVAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGFHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKVAGEQNLVAWAKPMFKDRRKFSQMADPMLKGHFPPRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLAAQRYDPSTEPAQSSFLSPGTPPRGYRNGARKLSVGSTNGRTQTKRWS 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1540435 1542669 + Conep03aG0030500.1 Cone3ag0298 433757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0298 403 Pfam Protein tyrosine and serine/threonine kinase 83 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0298 403 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0298 403 SMART serkin_6 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0298 403 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Cone3ag0298 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0298 403 PANTHER OS07G0668900 PROTEIN 20 369 - -
Cone3ag0298 403 Gene3D Transferase(Phosphotransferase) domain 1 155 369 - -
Cone3ag0298 403 FunFam Serine/threonine-protein kinase PBS1 50 154 - -
Cone3ag0298 403 MobiDBLite consensus disorder prediction 1 58 - -
Cone3ag0298 403 SUPERFAMILY Protein kinase-like (PK-like) 60 352 IPR011009 -
Cone3ag0298 403 MobiDBLite consensus disorder prediction 1 15 - -
Cone3ag0298 403 MobiDBLite consensus disorder prediction 387 403 - -
Cone3ag0298 403 MobiDBLite consensus disorder prediction 364 403 - -
Cone3ag0298 403 CDD STKc_IRAK 84 352 - -
Cone3ag0298 403 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Cone3ag0298 403 MobiDBLite consensus disorder prediction 39 58 - -
Cone3ag0298 403 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0298 Cone-Chr3:1540435 Cone7ag0170 Cone-Chr7:711534 1.14E-184 dispersed
Cone7ag1938 Cone-Chr7:12374215 Cone3ag0298 Cone-Chr3:1540435 5.32E-60 dispersed
Cone1ag1332 Cone-Chr1:56450553 Cone3ag0298 Cone-Chr3:1540435 1.33E-200 wgd
Cone1ag0688 Cone-Chr1:6432681 Cone3ag0298 Cone-Chr3:1540435 2.89E-35 wgd
Cone10ag0271 Cone-Chr10:1290438 Cone3ag0298 Cone-Chr3:1540435 8.99E-273 wgd
Cone11ag1273 Cone-Chr11:9465606 Cone3ag0298 Cone-Chr3:1540435 7.96E-174 wgd
Cone18ag0311 Cone-Chr18:1529245 Cone3ag0298 Cone-Chr3:1540435 1.56E-178 wgd
Cone3ag0298 Cone-Chr3:1540435 Cone5ag0318 Cone-Chr5:1348653 8.28E-195 wgd
Cone3ag0298 Cone-Chr3:1540435 Cone5ag1197 Cone-Chr5:5414199 5.22E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82655 PF10358 NT-C2 4.90E-10 CL0154 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0298 - - - 0.0