Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0299 ATGGCAGCTCCTTATATGTCGGAGATTCTTCCTCCATCGCTGGATGCCTCCTCCAAACCCCCTCCACTGTTCGACGGAACCACAAGGTTGTATGTGGCTTACACGTGTCCGTATGCACAGCGTGTTTGGCTCACCCGGAACTTTAAGGGACTACAAGAGAAGATTAAACTAGTGGATATAAACCTTCTAAACAGACCTACTTGGTACAAGGAGAAACTCTACCCAGGAAACAAGGTGCCGGCTTTGGAACATAATGGGAAAGTGATCGGAGAAAGTCTTGATTTGATCAAATATGTTGATGCCAACTTTGAAGGGCCTTCTCTTTTCCCAAATGATCCAGCTAAAAGAGAATTTGGTGAAGAGCTATTGTCATACACTGATACCTTCATAACTGAAGCTTTTACTGCATTCAAATTAGCGGACCCAACTGAGCAAGCTGGTTCTCAATTTGATTACTTGGAAAATGGTCTTAACAAATTTGATGATGGGCCTTTCTTCCTTGGCCAATTCAGTTTGGTGGATATAGCCTACATTCCTTTCGTTGAAAGATTCCAGATCTACTCAACTGAAGTGTTAAAGTATGACGTTACAGTAGGAAGGCCGAAACTCGCTGCTTGGATCGACGAGATGAACAAGTTTGATGCTTATACCCATACCAAGAAAACTGAACCTAAAGTGCTCATTGAATATTACAACAGGCGGATCGCGCACGATCTCCACGATCGCCCTCCACTAAACGTTACTCATTACGATGTGTGGAATGTGATTTCAATGTCCATATCTTATGCACAAGTGTCACATACATATGCTAACCCTTGTGGATATGATCACCATTCCCATCCCATCAATCGCGTAAGAAAGCTTCAGATTTCTTCCCAGTATTCACAAATGGCAACTGTGTATGTGCCAGAGATTCGTTCCCCAGCACTGGACGCCACCTCCGACCCGCCTTCATTGTTTGACGGATCCACAAGACTGTATATATCTTATTCGTGCCCATTTGCTCAGCGTGCTTGGATCACCAGAAACTATAAGGGATTACAGGAGAAGATTAAACTAGTTGGTTTGGACCTTCAAAATAGACCTGCTTGGTATAAGGAGAAAGTCTACCCAGAAAACAAGGTGCCAGCTTTGGAACATGATGGGAAAGTCATTGGAGAAAGCCTTGATCTTGTCAAATATATCGATGCTCACTTTGATGGCCCCTCTGTTATTCCAAATGAGCCTGCTAAGAAAGAGTATAGTGAAGAGCTATTGTCCTACACTGATACATTCATCAGAGAAGTGTTCACTTCAATCAAAGGAGACCCAATCAAGCAATCCGCTGCCTTAAGCGCTCAATTTGATTACTTGGAAAATGCCCTGCACAAGTTTGATGATGGGCCATTTTTCCTTGGCCAGTTCAGTCTGGTGGATATAGCCTACATTCCGTTTGTTGAAAGATTCCACATTTACTTATCCGAGGTGTTCAACTACCACATTACAGAAGGGAGGCCTAAACTTGCCGCCTGGATCGCGGAGATCAACGAGTTTGATGCTTATAAGCCAACAAAACCTGATCCTAAAGAGCTCGTTGAGTTTTACAAGAAGCGGTTCTCGGGCTAG 1605 43.61 MAAPYMSEILPPSLDASSKPPPLFDGTTRLYVAYTCPYAQRVWLTRNFKGLQEKIKLVDINLLNRPTWYKEKLYPGNKVPALEHNGKVIGESLDLIKYVDANFEGPSLFPNDPAKREFGEELLSYTDTFITEAFTAFKLADPTEQAGSQFDYLENGLNKFDDGPFFLGQFSLVDIAYIPFVERFQIYSTEVLKYDVTVGRPKLAAWIDEMNKFDAYTHTKKTEPKVLIEYYNRRIAHDLHDRPPLNVTHYDVWNVISMSISYAQVSHTYANPCGYDHHSHPINRVRKLQISSQYSQMATVYVPEIRSPALDATSDPPSLFDGSTRLYISYSCPFAQRAWITRNYKGLQEKIKLVGLDLQNRPAWYKEKVYPENKVPALEHDGKVIGESLDLVKYIDAHFDGPSVIPNEPAKKEYSEELLSYTDTFIREVFTSIKGDPIKQSAALSAQFDYLENALHKFDDGPFFLGQFSLVDIAYIPFVERFHIYLSEVFNYHITEGRPKLAAWIAEINEFDAYKPTKPDPKELVEFYKKRFSG 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1542745 1547044 - Conep03aG0030600.1 Cone3ag0299 433758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0299 534 CDD GST_C_Lambda 408 529 - -
Cone3ag0299 534 SUPERFAMILY GST C-terminal domain-like 103 234 IPR036282 -
Cone3ag0299 534 SUPERFAMILY Thioredoxin-like 320 402 IPR036249 -
Cone3ag0299 534 SFLD Main (cytGST) 325 509 - -
Cone3ag0299 534 SFLD Main (cytGST) 29 211 - -
Cone3ag0299 534 Gene3D Glutaredoxin 1 104 - -
Cone3ag0299 534 Gene3D Glutaredoxin 297 400 - -
Cone3ag0299 534 FunFam Glutathione S-transferase L2, chloroplastic 297 400 - -
Cone3ag0299 534 SUPERFAMILY Thioredoxin-like 19 108 IPR036249 -
Cone3ag0299 534 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 322 403 IPR004045 -
Cone3ag0299 534 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 408 532 IPR010987 -
Cone3ag0299 534 CDD GST_C_Lambda 112 231 - -
Cone3ag0299 534 FunFam Lambda class glutathione S-transferase 105 238 - -
Cone3ag0299 534 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 26 107 IPR004045 -
Cone3ag0299 534 FunFam Lambda class glutathione S-transferase 401 534 - -
Cone3ag0299 534 Pfam Glutathione S-transferase, C-terminal domain 149 208 - -
Cone3ag0299 534 Pfam Glutathione S-transferase, C-terminal domain 442 506 - -
Cone3ag0299 534 Gene3D - 401 534 - -
Cone3ag0299 534 Gene3D - 105 238 - -
Cone3ag0299 534 SFLD Glutathione Transferase (cytosolic) 325 509 IPR040079 -
Cone3ag0299 534 SFLD Glutathione Transferase (cytosolic) 29 211 IPR040079 -
Cone3ag0299 534 SUPERFAMILY GST C-terminal domain-like 399 532 IPR036282 -
Cone3ag0299 534 FunFam Glutathione S-transferase L2, chloroplastic 1 104 - -
Cone3ag0299 534 Pfam Glutathione S-transferase, N-terminal domain 326 402 IPR004045 -
Cone3ag0299 534 Pfam Glutathione S-transferase, N-terminal domain 30 106 IPR004045 -
Cone3ag0299 534 PANTHER GLUTATHIONE S-TRANSFERASE L1 297 532 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0299 Cone-Chr3:1542745 Cone3ag0300 Cone-Chr3:1547738 3.06E-99 tandem
Cone1ag1330 Cone-Chr1:56437501 Cone3ag0299 Cone-Chr3:1542745 2.45E-98 wgd
Cone10ag0272 Cone-Chr10:1296589 Cone3ag0299 Cone-Chr3:1542745 4.23E-132 wgd
Cone13ag1302 Cone-Chr13:9718133 Cone3ag0299 Cone-Chr3:1542745 5.22E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0299 K00799 - vvi:100261962 362.459