Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0302 ATGGTTAGGACCTGTTGGAAACCTTCCGTAGAAAATGATGATGATTCTAATGGCCGGGTTGACGGGTTGTTGTGGTACAAGGATTTGGGCCGTCATGTTCATGGAGAATTCTCGATGGCCGTGATTCAAGCAAACAGTTTGTTAGAAGATCAAAGCCAGATTGAATCTGGGCTGCTGAGTTCCACCCTTTCGGGATCATTTGGGACCTTTATCGGGGTCTATGATGGGCATGGAGGACCCGATGCTGCACATTTCATCAACAACAATCTCTTCGACAATCTCAAGAGGTTTGTGTCAATGGATGGGGGCGTAACTGTGAATGCGATCCGAAAGGCTTTTGCAACCACAGAAGACAGGTTTCTCTCGGTTGTTCGGAAAGAGTGGAAAATGAAGCCATGGACCGCATCTTCCGGTTCATGTTGTTTGGTGGGGATTATAAGCAATGGAGACCTTTTTATTGCAAATTTAGGGGACTCAAGAGTGGTATTAGGGAGAAGCGGAATAGGTAGTAGTTGTAGTAAAGAAGTTACGGCTGTTCAATTATCTTCAGAACACAATGCAAATGTAGAGTCGGTGAGGAAAGAGCTTAAACAAATGCATCCTCATGATCCCGATATTGTCATGCTCAAACACAACGTTTGGCGTGTAAAAGGCATTATACAGGTTTCAAGGTGCATTGGTGATGCATATTTGAAGAAAGCTGAATTCAACAAGGAGCCTCTACTGCCTAAATTTAGGTTACACGAGTCTTTCGACAAGCCGATCCTTAGCTCGGAGCCATCAATATCAGTACACAAACTCCATTTTTCCGAAGATCGGTTTCTCATCTTTGCATCTGATGGTTTATGGGAGCACCTCAGCAACCAGAGGGCTGTTGACATCGTCAGTAATCACCCACGAACTGGGATTGCAGCAAGGCTTGTGAAGGCGGCACTTAAAGAAGCAGCTAAGAAAAGAGAGATGAGATACTCGGACTTGAAGAAGGTTGACATAGCTGTGAGAAGACATTTTCATGACGACATAACAGTTGTAGTTGTTTTCTTAGACAACTGTTCAATCAATACATGTAAATCTCTTTCAATGAGAGGAGGTGTAGGGATTTATTCACTTGCAAGTTTCTAG 1122 43.67 MVRTCWKPSVENDDDSNGRVDGLLWYKDLGRHVHGEFSMAVIQANSLLEDQSQIESGLLSSTLSGSFGTFIGVYDGHGGPDAAHFINNNLFDNLKRFVSMDGGVTVNAIRKAFATTEDRFLSVVRKEWKMKPWTASSGSCCLVGIISNGDLFIANLGDSRVVLGRSGIGSSCSKEVTAVQLSSEHNANVESVRKELKQMHPHDPDIVMLKHNVWRVKGIIQVSRCIGDAYLKKAEFNKEPLLPKFRLHESFDKPILSSEPSISVHKLHFSEDRFLIFASDGLWEHLSNQRAVDIVSNHPRTGIAARLVKAALKEAAKKREMRYSDLKKVDIAVRRHFHDDITVVVVFLDNCSINTCKSLSMRGGVGIYSLASF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1556709 1558164 - Conep03aG0030900.1 Cone3ag0302 433761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0302 373 ProSiteProfiles PPM-type phosphatase domain profile. 33 348 IPR001932 -
Cone3ag0302 373 Pfam Protein phosphatase 2C 69 317 IPR001932 -
Cone3ag0302 373 CDD PP2Cc 37 348 IPR001932 -
Cone3ag0302 373 SUPERFAMILY PP2C-like 45 350 IPR036457 -
Cone3ag0302 373 SMART PP2C_4 30 346 IPR001932 -
Cone3ag0302 373 PANTHER PROTEIN PHOSPHATASE 30 347 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone3ag0302 373 ProSitePatterns PPM-type phosphatase domain signature. 70 78 IPR000222 GO:0043169(InterPro)
Cone3ag0302 373 Gene3D - 27 355 IPR036457 -
Cone3ag0302 373 FunFam Phosphatase 2C family protein 25 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0302 Cone-Chr3:1556709 Cone8ag0870 Cone-Chr8:8576582 1.22E-163 dispersed
Cone13ag1304 Cone-Chr13:9722631 Cone3ag0302 Cone-Chr3:1556709 7.31E-130 wgd
Cone19ag1291 Cone-Chr19:8745634 Cone3ag0302 Cone-Chr3:1556709 4.93E-145 wgd
Cone3ag0302 Cone-Chr3:1556709 Cone5ag0316 Cone-Chr5:1328554 7.35E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0302 - - - 0.0