Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0312 ATGGGGAACGCTTGTAACAAGCATGGTCACCACCGCAAACACCATAACTCAGCTACTGCTACTACCTCTCTCTCTACGCCCTATAAATCCGATCCATCCGATAATCCCCCCCAATTACCGGCCTCAAAGGCGAGTACTGCTCCTATGGCGCCTTTTCCCTATCCTCATGTCGATTCGAGCTTACGAGCCCTCGCCGGAAAAGCTGAAGGGTTCGGCCGCCTCGCCGTTGGTGGTCTCCATGGTCCGACTTACTGCGTCACCACCTTAGCAGATGATGGCCCTGGGTCGTTAAGGGATGGATGCAGGAAGAAAGAGCCGCTTTGGATTGTGTTTGAACTTTCAGGAACTATTCATCTCGGATCTTACTTGAATGTTTCTTCATATAAGACCATAGATGGTCGAGGCCAGAGGATTAAACTTACAGGGAAAGGATTGAGGTTGAAGGAATGTGAACATGTAATTATCTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCCGGATGCTGATGCTATTCAAATCAAACCGAATTCAAAGCATATTTGGATTGATCGTTGTAGCCTCCGAGACTATGATGATGGATTGATCGATATTACTCGAGAAAGCACTGATATTACTATTTCAAGGTGTCACTTTTCCAAACATGACAAGACGATTCTCATTGGAGCGGACCCTACTCATGTATCCGATAGATGCATACGGGTTACCATTCACCATTGCTTTTTTGATGGGACCAGACAAAGACACCCTCGTGTTAGATTCGCTAGAGTTCATTTATACAATAATTATACCAGAAACTGGGGGATCTATGCTGTTTGTGCCAGTGTAGAATCACAGATATTCTCCCAATGCAACATATATGAGGCTGGACAAAAGAAGATAGCATTTAAATATCTTACAGAGAAGGCTGCAGACAAGGAGGAGGCAGCGACTGGGGGGATAAGGTCTGAAGGAGACTTATTTATAACTGGGACTCAAGCCGGGCTGATGAATGAACATTGTGGTCATACCCTGTTCCACCCTAGTGAACATTATGATAACTGGACAGTCCAACCTCCTTCCGAAGATCTGAAACATGCTATTCAACATTGCTCAGGATGGCAAAGTATTCCTCGGCCACTAGATCAGATGGCAACGGTATAG 1140 45.53 MGNACNKHGHHRKHHNSATATTSLSTPYKSDPSDNPPQLPASKASTAPMAPFPYPHVDSSLRALAGKAEGFGRLAVGGLHGPTYCVTTLADDGPGSLRDGCRKKEPLWIVFELSGTIHLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDADAIQIKPNSKHIWIDRCSLRDYDDGLIDITRESTDITISRCHFSKHDKTILIGADPTHVSDRCIRVTIHHCFFDGTRQRHPRVRFARVHLYNNYTRNWGIYAVCASVESQIFSQCNIYEAGQKKIAFKYLTEKAADKEEAATGGIRSEGDLFITGTQAGLMNEHCGHTLFHPSEHYDNWTVQPPSEDLKHAIQHCSGWQSIPRPLDQMATV 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1590028 1592174 + Conep03aG0031900.1 Cone3ag0312 433771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0312 379 Gene3D - 54 361 IPR012334 -
Cone3ag0312 379 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Cone3ag0312 379 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Cone3ag0312 379 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Cone3ag0312 379 MobiDBLite consensus disorder prediction 1 47 - -
Cone3ag0312 379 MobiDBLite consensus disorder prediction 18 42 - -
Cone3ag0312 379 Pfam Pectate lyase 123 285 IPR002022 -
Cone3ag0312 379 MobiDBLite consensus disorder prediction 1 17 - -
Cone3ag0312 379 PANTHER PECTATE LYASE 18-RELATED 59 351 IPR045032 GO:0030570(InterPro)
Cone3ag0312 379 SMART amb_all 94 292 IPR002022 -
Cone3ag0312 379 SUPERFAMILY Pectin lyase-like 65 374 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0312 Cone-Chr3:1590028 Cone5ag0370 Cone-Chr5:1575229 5.49E-40 dispersed
Cone11ag1100 Cone-Chr11:8571623 Cone3ag0312 Cone-Chr3:1590028 2.73E-194 wgd
Cone18ag0478 Cone-Chr18:2312634 Cone3ag0312 Cone-Chr3:1590028 2.61E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0312 K01728 - mdm:103450189 609.372