Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0333 ATGAATTTTTCATCCATACCAGCTTATAATCTCGATCCAGCCAACTGGCAACAGCAACCGAACCATCGAAATGGAACTAGTAGTATTTCTCAGCTAATTTCTGATCCACCTTTACCTAACCCATCACTGCCTTCACCGCCACCACTGCAGCCACATGGTAGTACAAGCACAGGATCGATCAGGCCTGGCTCGATGGCTGATCGGGCTCGAATGGCTAACATACCGATGCCAGAAGCGGCACTACAATGTCCAAGATGTGAATCCACGAACACCAAGTTTTGCTACTTCAATAACTACAACCTTTCTCAACCAAGGCACTTTTGCAAGGCTTGTAGAAGGTATTGGACAAGAGGAGGTGCCCTTAGGAATGTTCCGGTAGGTGGTGGTTGTCGGAGAAATAAACGGAGCAAAAGTACCTCGAAGTCACCTGCGGGGTCCGATAACCGTAGTCAAGCTAGTACGAGTACCGGTCCAGGCTCTTCAAATATCGGAATAAATTATAATAGTAGTACTGGAAATGTTATAAGCACTCATGATCATGTTATAGGGGTTTCGCATCAAGTCCCGTCTTTAAGGTTCATGACTCCTAATTTACATCAACTTACTGATCATTTCGGAGGTGGTGATAGTCATATTAGCTTAAATTACGGCTTGAATTATGGTGGCACTGCGATTTCCACTCCAATGGGTGGTAGTCATGGAGATTTGAATTTTCACCTTGGAAGTGTTAGTTTAGGTGGTGGAAATGAAGGGAGTAATACAATTAGTACTGTCGGTGGTGCTGGAGGTCTTGGAGGGAGTTTCTTAGGGTTGGAGCAATGGCGGCCCCCGCAATTTCCGTTTTTGGGTTCAGGGTTAGACACTTCAATGGGGTTGTTTGAAAGCAGCGGTGGAGGGGGAGGCTCGAGTTATGGTCGTGGTGATCAAATGGGGGAGCTCAAGGCGAGTAACAGTAGCACTAAGGAGAGTAGTGATGATCAGGTAGCTGGTTCAATGAAAGTGCAAGAAGCTCAAGGGCTAAACTTAGGGAGGCAGTATTTGGGAAGTAAAGGAAATGATCATGGTCAGCATTATAACTGGGGTGGTTTTACTTCTTCTTCCAATATTAGAAACTGA 1116 45.52 MNFSSIPAYNLDPANWQQQPNHRNGTSSISQLISDPPLPNPSLPSPPPLQPHGSTSTGSIRPGSMADRARMANIPMPEAALQCPRCESTNTKFCYFNNYNLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSKSTSKSPAGSDNRSQASTSTGPGSSNIGINYNSSTGNVISTHDHVIGVSHQVPSLRFMTPNLHQLTDHFGGGDSHISLNYGLNYGGTAISTPMGGSHGDLNFHLGSVSLGGGNEGSNTISTVGGAGGLGGSFLGLEQWRPPQFPFLGSGLDTSMGLFESSGGGGGSSYGRGDQMGELKASNSSTKESSDDQVAGSMKVQEAQGLNLGRQYLGSKGNDHGQHYNWGGFTSSSNIRN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1692917 1694513 + Conep03aG0034100.1 Cone3ag0333 433792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0333 371 MobiDBLite consensus disorder prediction 293 371 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 1 63 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 1 36 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 37 51 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 125 165 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 312 331 - -
Cone3ag0333 371 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0333 371 MobiDBLite consensus disorder prediction 139 165 - -
Cone3ag0333 371 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0333 371 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0333 371 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 164 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0333 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0333 Cone-Chr3:1692917 Cone5ag1208 Cone-Chr5:5520489 4.49E-31 dispersed
Cone20ag0393 Cone-Chr20:1902356 Cone3ag0333 Cone-Chr3:1692917 1.96E-30 transposed
Cone1ag1284 Cone-Chr1:56242528 Cone3ag0333 Cone-Chr3:1692917 8.92E-54 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone3ag0333 Cone-Chr3:1692917 6.21E-58 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone3ag0333 Cone-Chr3:1692917 2.93E-208 wgd
Cone13ag1337 Cone-Chr13:9841457 Cone3ag0333 Cone-Chr3:1692917 1.67E-85 wgd
Cone19ag1320 Cone-Chr19:8863235 Cone3ag0333 Cone-Chr3:1692917 1.04E-85 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag0270 Cone-Chr5:1144528 1.48E-51 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag1158 Cone-Chr5:5209015 1.48E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.3e-42 170.2
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT1G29160 56.5 1.7e-42 169.9
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT2G34140 53.9 6.3e-42 167.9
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT2G34140 55.7 2.4e-41 166.0
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 59.7 1.0e-40 164.9
Cone3ag0333 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 60.8 1.5e-39 161.0
Cone10ag0305 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 60.3 8.1e-38 155.2
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 56.7 9.0e-37 151.8
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 57.4 9.0e-37 151.8
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 58.2 9.5e-41 165.2
Cone1ag1284 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 56.3 3.1e-39 160.2
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 58.5 2.0e-38 157.5
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 55.1 3.7e-37 153.3
Cone6ag1371 . 22 230 C2C2-Dof Transcription Factor Family AT3G50410 50.2 2.7e-49 193.0
Cone5ag0270 . 54 248 C2C2-Dof Transcription Factor Family AT3G55370 50.7 1.4e-41 167.9
Cone19ag0032 . 27 307 C2C2-Dof Transcription Factor Family AT5G60850 50.7 3.6e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45780 PF13639 zf-RING_2 4.90E-07 CL0229 Cone TF