Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0333 ATGAATTTTTCATCCATACCAGCTTATAATCTCGATCCAGCCAACTGGCAACAGCAACCGAACCATCGAAATGGAACTAGTAGTATTTCTCAGCTAATTTCTGATCCACCTTTACCTAACCCATCACTGCCTTCACCGCCACCACTGCAGCCACATGGTAGTACAAGCACAGGATCGATCAGGCCTGGCTCGATGGCTGATCGGGCTCGAATGGCTAACATACCGATGCCAGAAGCGGCACTACAATGTCCAAGATGTGAATCCACGAACACCAAGTTTTGCTACTTCAATAACTACAACCTTTCTCAACCAAGGCACTTTTGCAAGGCTTGTAGAAGGTATTGGACAAGAGGAGGTGCCCTTAGGAATGTTCCGGTAGGTGGTGGTTGTCGGAGAAATAAACGGAGCAAAAGTACCTCGAAGTCACCTGCGGGGTCCGATAACCGTAGTCAAGCTAGTACGAGTACCGGTCCAGGCTCTTCAAATATCGGAATAAATTATAATAGTAGTACTGGAAATGTTATAAGCACTCATGATCATGTTATAGGGGTTTCGCATCAAGTCCCGTCTTTAAGGTTCATGACTCCTAATTTACATCAACTTACTGATCATTTCGGAGGTGGTGATAGTCATATTAGCTTAAATTACGGCTTGAATTATGGTGGCACTGCGATTTCCACTCCAATGGGTGGTAGTCATGGAGATTTGAATTTTCACCTTGGAAGTGTTAGTTTAGGTGGTGGAAATGAAGGGAGTAATACAATTAGTACTGTCGGTGGTGCTGGAGGTCTTGGAGGGAGTTTCTTAGGGTTGGAGCAATGGCGGCCCCCGCAATTTCCGTTTTTGGGTTCAGGGTTAGACACTTCAATGGGGTTGTTTGAAAGCAGCGGTGGAGGGGGAGGCTCGAGTTATGGTCGTGGTGATCAAATGGGGGAGCTCAAGGCGAGTAACAGTAGCACTAAGGAGAGTAGTGATGATCAGGTAGCTGGTTCAATGAAAGTGCAAGAAGCTCAAGGGCTAAACTTAGGGAGGCAGTATTTGGGAAGTAAAGGAAATGATCATGGTCAGCATTATAACTGGGGTGGTTTTACTTCTTCTTCCAATATTAGAAACTGA 1116 45.52 MNFSSIPAYNLDPANWQQQPNHRNGTSSISQLISDPPLPNPSLPSPPPLQPHGSTSTGSIRPGSMADRARMANIPMPEAALQCPRCESTNTKFCYFNNYNLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSKSTSKSPAGSDNRSQASTSTGPGSSNIGINYNSSTGNVISTHDHVIGVSHQVPSLRFMTPNLHQLTDHFGGGDSHISLNYGLNYGGTAISTPMGGSHGDLNFHLGSVSLGGGNEGSNTISTVGGAGGLGGSFLGLEQWRPPQFPFLGSGLDTSMGLFESSGGGGGSSYGRGDQMGELKASNSSTKESSDDQVAGSMKVQEAQGLNLGRQYLGSKGNDHGQHYNWGGFTSSSNIRN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1692917 1694513 + Conep03aG0034100.1 Cone3ag0333 433792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0333 371 MobiDBLite consensus disorder prediction 293 371 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 1 63 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 1 36 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 37 51 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 125 165 - -
Cone3ag0333 371 MobiDBLite consensus disorder prediction 312 331 - -
Cone3ag0333 371 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0333 371 MobiDBLite consensus disorder prediction 139 165 - -
Cone3ag0333 371 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0333 371 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0333 371 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 164 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0333 Cone-Chr3:1692917 Cone5ag1208 Cone-Chr5:5520489 4.49E-31 dispersed
Cone20ag0393 Cone-Chr20:1902356 Cone3ag0333 Cone-Chr3:1692917 1.96E-30 transposed
Cone1ag1284 Cone-Chr1:56242528 Cone3ag0333 Cone-Chr3:1692917 8.92E-54 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone3ag0333 Cone-Chr3:1692917 6.21E-58 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone3ag0333 Cone-Chr3:1692917 2.93E-208 wgd
Cone13ag1337 Cone-Chr13:9841457 Cone3ag0333 Cone-Chr3:1692917 1.67E-85 wgd
Cone19ag1320 Cone-Chr19:8863235 Cone3ag0333 Cone-Chr3:1692917 1.04E-85 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag0270 Cone-Chr5:1144528 1.48E-51 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag1158 Cone-Chr5:5209015 1.48E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45780 PF13639 zf-RING_2 4.90E-07 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0333 - - - 0.0