Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0336 ATGGCAGATACCGAGGATATTCAGCCTCTCGTCTGTGATAATGGAACTGGGATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTATTCCCAAGTATTGTTGGTCGCCCACGTCATACTGGTGTCATGGTTGGAATGGGGCAGAAAGATGCCTATGTTGGTGATGAGGCTCAATCAAAGCGTGGTATTTTAACTCTTAAATACCCTATTGAGCATGGGATTGTAAACAATTGGGATGATATGGAGAAGATTTGGCATCACACCTTTTACAATGAGCTTCGAGTTGCTCCAGAAGAGCATCCGATCCTCCTCACTGAAGCACCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAGATAATGTTTGAGACCTTCAATGCTCCTGCTATGTATGTTGCCATCCAGGCTGTTCTCTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTCGACTCTGGAGATGGTGTGAGTCACACAGTCCCCATTTATGAGGGGTATGCTCTTCCACATGCCATCCTCCGTCTCGATCTTGCTGGCCGTGACCTTACTGATGCCTTCATGAAAATTTTAACCGAGCGTGGCTATTCATTCACCACCACAGCCGAGCGAGAAATTGTTAGAGACATGAAAGAAAAATTAGCTTACATTGCCCTGGACTATGAACAAGAACTAGAGACCTCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAATTGCCCGACGGTCAGGTTATAACCATTGGGGCAGAACGTTTCCGTTGCCCGGAAGTTCTTTTCCAGCCATCTATGATTGGGATGGAAGCTGCTGGCATACATGAGACTACTTACAACTCTATCATGAAATGTGATGTTGATATTAGGAAGGATTTATATGGAAACATTGTTCTTAGTGGTGGTTCGACCATGTTCCCGGGTATTGCTGATCGGATGAGCAAGGAAATTACTGCACTAGCCCCAAGTAGCATGAAGATAAAGGTGGTTGCTCCGCCTGAGAGGAAGTATAGTGTTTGGATTGGAGGCTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCCGAGTATGATGAGTCTGGTCCTTCGATCGTTCACAGGAAATGCTTCTGA 1134 46.65 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAFMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1708645 1710207 + Conep03aG0034400.1 Cone3ag0336 433795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0336 377 FunFam Major actin 260 340 - -
Cone3ag0336 377 Gene3D - 140 340 - -
Cone3ag0336 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cone3ag0336 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone3ag0336 377 FunFam Actin, muscle 182 273 - -
Cone3ag0336 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cone3ag0336 377 FunFam Putative actin-related protein 5 341 369 - -
Cone3ag0336 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone3ag0336 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone3ag0336 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cone3ag0336 377 SMART actin_3 7 377 IPR004000 -
Cone3ag0336 377 Pfam Actin 5 377 IPR004000 -
Cone3ag0336 377 PRINTS Actin signature 51 62 IPR004000 -
Cone3ag0336 377 PRINTS Actin signature 238 254 IPR004000 -
Cone3ag0336 377 PRINTS Actin signature 63 85 IPR004000 -
Cone3ag0336 377 PRINTS Actin signature 142 161 IPR004000 -
Cone3ag0336 377 PRINTS Actin signature 28 37 IPR004000 -
Cone3ag0336 377 PRINTS Actin signature 117 130 IPR004000 -
Cone3ag0336 377 Gene3D - 10 371 - -
Cone3ag0336 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cone3ag0336 377 FunFam Actin, alpha skeletal muscle 3 167 - -
Cone3ag0336 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0481 Cone-Chr19:3952694 Cone3ag0336 Cone-Chr3:1708645 1.68E-273 dispersed
Cone3ag0092 Cone-Chr3:533119 Cone3ag0336 Cone-Chr3:1708645 8.35E-274 dispersed
Cone3ag0336 Cone-Chr3:1708645 Cone8ag0044 Cone-Chr8:248787 2.68E-270 dispersed
Cone12ag0933 Cone-Chr12:8147612 Cone3ag0336 Cone-Chr3:1708645 2.41E-34 transposed
Cone1ag1283 Cone-Chr1:56236946 Cone3ag0336 Cone-Chr3:1708645 3.40E-273 wgd
Cone1ag0645 Cone-Chr1:6178565 Cone3ag0336 Cone-Chr3:1708645 8.00E-272 wgd
Cone10ag0307 Cone-Chr10:1459597 Cone3ag0336 Cone-Chr3:1708645 5.48E-279 wgd
Cone3ag0336 Cone-Chr3:1708645 Cone5ag0269 Cone-Chr5:1138546 5.63E-272 wgd
Cone3ag0336 Cone-Chr3:1708645 Cone5ag1152 Cone-Chr5:5192143 9.74E-174 wgd
Cone3ag0336 Cone-Chr3:1708645 Cone9ag1250 Cone-Chr9:9202192 1.61E-271 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0336 K10355 - mdm:114819919 746.503