Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0344 ATGGCTTCTGTTACTGTGCTCTTCATTCTTTCTGTACTCTCGTTATTCGCAATGGGCAATGCTAGAATCCCCGGAGTCTTCACTGGCGGCCCATGGGAGAGCGCTCATGCTACTTTCTACGGCGGCAGCGACGCTTCAGGGACTATGGGCGGTGCTTGTGGATATGGAAATCTGTACAGCCAAGGCTATGGAGTGAACACCGCGGCGCTGAGCACATCTCTGTTCAACGACGGGCTTAGCTGCGGCGCTTGCTTCGAGCTTAAGTGCACTGACGATCCCAGGTGGTGTAACCCAGGTAACCCCTCCATCTTCATCACCGCCACCAACTTTTGTCCTCCTAACTTCGCTCAACCAAGCGACGATGGCGGCTGGTGCAACCCCCCTCGCCCCCATTTCGACCTCGCCATGCCCATGTTTCTCAAGATAGCCCAGTACCGCGCCGGAATAGTCCCCGTTTCTTTCCGCCGGGTCCCATGCAGGAAAGAGGGCGGAATCAGATTCACAATAAACGGTTTCCGTTACTTCAACCTGGTTTTAGTAACCAACGTAGGGGGTGCAGGAGATATCGTGAGGGTGAGCGTGAAAGGAACAAACACCGGCTGGATGACCCTTAGCCGTAACTGGGGACAAAACTGGCAGTCCAACGCCGTTTTGGTGGGTCAAGCTCTCTCCTTCAGAGTCACCGGCAGTGATCATCGCACCTCTACTTCCTGGAACATCGCTCCCGCCGACTGGAATTTCGGTCAGACTTTCACCGGGAAGAATTTCCGCATCTGA 777 54.83 MASVTVLFILSVLSLFAMGNARIPGVFTGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTSLFNDGLSCGACFELKCTDDPRWCNPGNPSIFITATNFCPPNFAQPSDDGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSFRRVPCRKEGGIRFTINGFRYFNLVLVTNVGGAGDIVRVSVKGTNTGWMTLSRNWGQNWQSNAVLVGQALSFRVTGSDHRTSTSWNIAPADWNFGQTFTGKNFRI 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1750135 1752102 - Conep03aG0035300.1 Cone3ag0344 433803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0344 258 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 CDD DPBB_EXPA_N 31 159 - -
Cone3ag0344 258 Gene3D - 19 160 IPR036908 -
Cone3ag0344 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cone3ag0344 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cone3ag0344 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cone3ag0344 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cone3ag0344 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cone3ag0344 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cone3ag0344 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cone3ag0344 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Cone3ag0344 258 Gene3D - 164 256 IPR036749 -
Cone3ag0344 258 FunFam Expansin 164 256 - -
Cone3ag0344 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cone3ag0344 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cone3ag0344 258 FunFam Expansin 21 160 - -
Cone3ag0344 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cone3ag0344 258 SMART dpbb_1 67 154 IPR007112 -
Cone3ag0344 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cone3ag0344 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cone3ag0344 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0344 Cone-Chr3:1750135 Cone4ag1056 Cone-Chr4:9198068 1.95E-144 dispersed
Cone1ag1273 Cone-Chr1:56207894 Cone3ag0344 Cone-Chr3:1750135 1.41E-141 wgd
Cone1ag0635 Cone-Chr1:6129085 Cone3ag0344 Cone-Chr3:1750135 6.04E-155 wgd
Cone10ag0314 Cone-Chr10:1493173 Cone3ag0344 Cone-Chr3:1750135 3.82E-176 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone3ag0344 Cone-Chr3:1750135 4.35E-150 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone3ag0344 Cone-Chr3:1750135 1.35E-149 wgd
Cone3ag0344 Cone-Chr3:1750135 Cone5ag0260 Cone-Chr5:1106128 8.57E-143 wgd
Cone3ag0344 Cone-Chr3:1750135 Cone5ag1140 Cone-Chr5:5119294 2.10E-155 wgd
Cone3ag0344 Cone-Chr3:1750135 Cone7ag1075 Cone-Chr7:8181630 4.96E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0344 - - - 0.0