Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0366 ATGAAGGACAACTACTATATAACAGTCCTACTCTTCTTGCTATTATGCGTTGGTTTCACTTCATCAGTAAAGCGTTGCTCCAACTGTGGGTTCACTCCAGTCCCGTATCCGCTAAGCACATCGCCAGATTGCGGCGACCAAATGTACAGAGTCCAGTGCAATTCGGGAAAACTATATCTCAACTCAGCTAATGGCTCTTCTTACTTAATCACATCAATCACCCCACAAGACCAGACGATGACTATTCGCCCGCCTGGCATTGCTAAAGGCACCTGCACGGCTTCTGATATCCAAACAGGTGGCATAGCGCTAGACAACAACCTTGCTTTTAATGTTACAGCCACCAATTCAGTTATTCTGATGAATTGTACCACATCAGTAATTGACAGCCCTTACGACTGCACCCCCTCCAGTGTTTGTCACGACTTTATCCGAGCAAGTCCCGAGCTGACATCAACATGTCGCATGTCATCGGTGTGTTGTTATTACAAAGCGGGCGGGTCTGCAAACGAGTATAAGATTCGAGTCAGGTATTCAAAATGTTCGGCTTATGAGACTTTTATTAACTTGGATATATCTTTGCCAGTGACTAAATGGCCCGAGCCCGGGTTGGAGATCCAGTGGGCCACGCCAGAGGAGCCATTGTGTATTATCCCTTCGGATTGTTTAGGTTTGAAGAACTCAAAATGTTTGCCCGATCCGCACAATTTGAGACAGAGGAAATGCTTTTGTAAAGCTGGGTTTATGTGGGATCCGAACAACTTCTTTTGTTACGCCAAGAAATGTGGGAATCCAAAGCGCTGTAAGCCTAAAAAGATGATGCCAATTCTCATAGGAGGCGTGTTTTCGGCAGTTGCAGTGATGCTTCTCGGTGTTACAGTCGTAATTCAAGCCAGGAAACGTCGTGCAAGAATCAATAGATCAGAACCGGAATCAAGTTTGCTAAAAGCTAGAGAAGACATCTTGAATTGTAACACTAGTTTCGGAAAATCGGCTAAGATATTCTCCAGCAAGGAAATATTAAAAGCAACAAACAACTTCTCCAAAGAGACCCTTCTAGGCTGTGGTGGTTTCGGAGAGGTCTTCAAAGGGGTTTTAGAGGACGGAACTCTAACCGCTGTTAAACGAGCTAAGCTTGGGAGCATGGCTGGCATTAATCAAATCCTTAACGAGGTTAAGATACTCAGCCAAGTCAACCATTGTAGCCTTGTCCGACTTCTAGGCTGTTGTGTTGAACTCGAACAACCTCTCCTAATCTATGAGTATGTATCTAATGGTACCCTTTTTGACCACCTCCATAGGACGTATAATTCCAGCCAGTGGGCCCCGCTTTCATGGAGTGACCGGCTTCGTATCGCCCACCAAACGGCTGAGGGCCTTTCTTATCTTCACAATTCAGCTGTACCTAAGATCTACCATAGGGATATAAAATCGAGTAACATATTACTAGATGAGAAATTGAAAGCTAAAGTTGCTGATTTCGGGCTTTCTAGGTTGGCTGTTTCCGAATCGAGTCATATAACCACTTGTGCTCGAGGCACTTTAGGTTATCTTGATCCAGAGTACTATGTTAATTTTCAGTTGACTGATAAGAGTGACGTTTATAGTTTTGGAGTTGTGTTGCTAGAACTGTTGACTTCGAAGAGAGCCATTGATTTCAACCGAGAAGAAGATGACGTGAACTTGGTGGTGTTTGGGAAGAAGATACTGAGAGAAGAAAGATTGATTGAAGCCATTGATCCTGCGCTTAAAGAAGGAGCTAGCAAGGTGGTATTGGAGACTATGAAGGCGATCGGGTCGTTAGCAGCAGCATGCTTAGATGAGAGGAGACAAAATAGGCCTGGGATGAAAGAAGTTGCTGACGAGATTGATTACATAATTGGAATTCATACAAGTGAGGTTACTCCCAAAGAATAA 1917 44.08 MKDNYYITVLLFLLLCVGFTSSVKRCSNCGFTPVPYPLSTSPDCGDQMYRVQCNSGKLYLNSANGSSYLITSITPQDQTMTIRPPGIAKGTCTASDIQTGGIALDNNLAFNVTATNSVILMNCTTSVIDSPYDCTPSSVCHDFIRASPELTSTCRMSSVCCYYKAGGSANEYKIRVRYSKCSAYETFINLDISLPVTKWPEPGLEIQWATPEEPLCIIPSDCLGLKNSKCLPDPHNLRQRKCFCKAGFMWDPNNFFCYAKKCGNPKRCKPKKMMPILIGGVFSAVAVMLLGVTVVIQARKRRARINRSEPESSLLKAREDILNCNTSFGKSAKIFSSKEILKATNNFSKETLLGCGGFGEVFKGVLEDGTLTAVKRAKLGSMAGINQILNEVKILSQVNHCSLVRLLGCCVELEQPLLIYEYVSNGTLFDHLHRTYNSSQWAPLSWSDRLRIAHQTAEGLSYLHNSAVPKIYHRDIKSSNILLDEKLKAKVADFGLSRLAVSESSHITTCARGTLGYLDPEYYVNFQLTDKSDVYSFGVVLLELLTSKRAIDFNREEDDVNLVVFGKKILREERLIEAIDPALKEGASKVVLETMKAIGSLAAACLDERRQNRPGMKEVADEIDYIIGIHTSEVTPKE 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1855957 1858158 + Conep03aG0037500.1 Cone3ag0366 433825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0366 638 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0366 638 Gene3D Transferase(Phosphotransferase) domain 1 423 634 - -
Cone3ag0366 638 FunFam Wall-associated receptor kinase-like 20 423 635 - -
Cone3ag0366 638 SUPERFAMILY Protein kinase-like (PK-like) 328 624 IPR011009 -
Cone3ag0366 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0366 638 CDD STKc_IRAK 353 624 - -
Cone3ag0366 638 Pfam Wall-associated receptor kinase galacturonan-binding 26 82 IPR025287 GO:0030247(InterPro)
Cone3ag0366 638 Gene3D Phosphorylase Kinase; domain 1 311 422 - -
Cone3ag0366 638 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 320 422 - -
Cone3ag0366 638 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524(InterPro)
Cone3ag0366 638 SMART serkin_6 347 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0366 638 Pfam Protein kinase domain 348 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0366 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 626 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0366 Cone-Chr3:1855957 Cone7ag1497 Cone-Chr7:10467632 4.15E-88 dispersed
Cone11ag1152 Cone-Chr11:8836063 Cone3ag0366 Cone-Chr3:1855957 1.25E-236 wgd
Cone18ag0432 Cone-Chr18:2104882 Cone3ag0366 Cone-Chr3:1855957 2.98E-229 wgd
Cone3ag0366 Cone-Chr3:1855957 Cone5ag1103 Cone-Chr5:4906185 6.72E-61 wgd
Cone3ag0366 Cone-Chr3:1855957 Cone9ag1279 Cone-Chr9:9578313 1.90E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82656 PF02362 B3 7.80E-22 CL0405 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0366 - - - 0.0