Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0372 ATGGCGGAGGGTTATGATCACCAGGCCTATGATCATATCCCACAAAGAAGTAGAAGAGATAAGCTCAGAGTTCTCTCCGCCCTGCAGGTGGAAGAACCCGGCGCCATACCTAATTATAATTTTCATAACATGAGTTCATCAGGTTCGTTCCCTTTGTTTGATCCCTCTCTTATCCCATCAGCAGCTGGTAACAATTGTGTTATCAAAGAAGAAAGGTCAGCAATAAACCATTTCATGGGTTTTCCTGGAAACTGCATTATGATGGATCATGATGATCATCACCAATCGCCTACTAACTTACCTATTAACAGCAACCCATTCCTAAATTACCCTCCAGAAAACCTTCAGACCCTTAGAGATTTAAACGAGATGATGGTGTTTAATAAGCTGCCAGAACCGTTGTCACTGTCACTTTCGTCTCGGCCATTAGAGGAGCCCAATCTTCAAAGATATGGGCCGTCAGGTTCTATTTATAATGCTGAGTCCTGCAGGCCGGCCGGCTCATCAGTTCCTCTAGGGCCTTTTACAGGTTACACTTCAATTTTGAAGGCTTCCAGGTTTTTAAAGCCTGTCCAGCAGCTCTTGGAGGAGTTCTGTGAAGTTGAGGGTCAGGGATCAATTCATGTCGATGAGAAAATAGTGGCCGATTCAGGTTTAACGGATTATTCGTCGTCTTATGACTGTCACTCTGGCGATGGAGGTGGTGATCAAGGTGAAGGTGGGAGAAAGAAGTCTAGGCTAATCTCCATGCTTGATGAGGTTTGCAGAAGATACAAGCAGTATTTTCAACAAATGCAGGCTGTGGTAGCTTCATTTGAATGTGTTCCCGGGCTAGGGAATGCGGCTCCATATGTTACCTTAGCTATGAAATCCATGTCAAAGCACTTTAGGTACTTGAAAAATGCAATCACAGACCAGCATCAGTTCACCAATAAGACCGCTAATAGTCATAGTTATTCCCAAAGATCTACTCACAACTCAGGATTATTCTTAGACAACCAATCCGTTTGGCGTCCCCAAAGGGGCCTTCCCGAGCGTGCCGTAAATGTTCTCAGGGCATGGTTATTCGAGCATTTCCTTCATCCCTACCCTACAGATTCAGACAAGCTAATGCTGGCAAAACAAACTGGTCTGTCACGGAGTCAGGTATCTAATTGGTTCATCAATGCGAGAGTGAGGCTTTGGAAGCCTATGGTGGAAGAAATACACATGCTCGAAACAAGACAGTCCCAAAAAGCATTGCAAAGCGACGGACAAAACGCCAACCGGACAAGCTCATCCCTTGCATCTGATCAGAACCCGTCCACATCAACTCAGCCATGTGCCCTTACTTCAAAACGCAATAGAAATGAACTTACTAATTACAATATTATTACCACGGCCAATGACGAAATGCAGAACCTATCTTACAGCAATTTTCCTCATGCGAGCATGGCCCCGGGATCAAATGGAGGCGTCTCCTTAACATTAGGTCTTCAGCAGAACATTAACGGGATAGGTGGTCAAGGTTATGGATTAGGGCTTCATGAGGTTGTCGATAGGGAAGGATACGTAGTAATGAGCGGTTTTCATGAGGCACACAATCGTCATTTTGGAAGGGATGTGATTGGAGGGCAGCTTTTGCATGATTTCGTGGGCTGA 1641 44.97 MAEGYDHQAYDHIPQRSRRDKLRVLSALQVEEPGAIPNYNFHNMSSSGSFPLFDPSLIPSAAGNNCVIKEERSAINHFMGFPGNCIMMDHDDHHQSPTNLPINSNPFLNYPPENLQTLRDLNEMMVFNKLPEPLSLSLSSRPLEEPNLQRYGPSGSIYNAESCRPAGSSVPLGPFTGYTSILKASRFLKPVQQLLEEFCEVEGQGSIHVDEKIVADSGLTDYSSSYDCHSGDGGGDQGEGGRKKSRLISMLDEVCRRYKQYFQQMQAVVASFECVPGLGNAAPYVTLAMKSMSKHFRYLKNAITDQHQFTNKTANSHSYSQRSTHNSGLFLDNQSVWRPQRGLPERAVNVLRAWLFEHFLHPYPTDSDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQSQKALQSDGQNANRTSSSLASDQNPSTSTQPCALTSKRNRNELTNYNIITTANDEMQNLSYSNFPHASMAPGSNGGVSLTLGLQQNINGIGGQGYGLGLHEVVDREGYVVMSGFHEAHNRHFGRDVIGGQLLHDFVG 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1878156 1881036 - Conep03aG0038200.1 Cone3ag0372 433831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0372 546 CDD homeodomain 337 398 IPR001356 GO:0003677(InterPro)
Cone3ag0372 546 SMART HOX_1 337 401 IPR001356 GO:0003677(InterPro)
Cone3ag0372 546 Pfam Associated with HOX 182 304 IPR006563 -
Cone3ag0372 546 SMART prehox3 176 305 IPR006563 -
Cone3ag0372 546 FunFam BEL1-like homeodomain protein 9 340 402 - -
Cone3ag0372 546 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 123 432 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone3ag0372 546 ProSiteProfiles 'Homeobox' domain profile. 334 397 IPR001356 GO:0003677(InterPro)
Cone3ag0372 546 Gene3D - 340 402 - -
Cone3ag0372 546 Pfam Homeobox KN domain 354 393 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag0372 546 SUPERFAMILY Homeodomain-like 339 404 IPR009057 -
Cone3ag0372 546 MobiDBLite consensus disorder prediction 410 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1311 Cone-Chr11:9683624 Cone3ag0372 Cone-Chr3:1878156 2.99E-66 dispersed
Cone3ag0372 Cone-Chr3:1878156 Cone8ag0088 Cone-Chr8:468633 1.63E-57 dispersed
Cone10ag0342 Cone-Chr10:1625091 Cone3ag0372 Cone-Chr3:1878156 0 wgd
Cone13ag1363 Cone-Chr13:9972758 Cone3ag0372 Cone-Chr3:1878156 9.41E-128 wgd
Cone19ag1357 Cone-Chr19:9008974 Cone3ag0372 Cone-Chr3:1878156 8.07E-123 wgd
Cone3ag0372 Cone-Chr3:1878156 Cone9ag1286 Cone-Chr9:9611690 5.46E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45785 PF13639 zf-RING_2 9.20E-11 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0372 - - - 0.0