Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0384 | ATGTCGGCTTTAGAAATCTCCCACATAGACTTAGAGGCTGGAAGTGACGTCGGCGCCGAAAAAGATGACAGCGGATTCTTCTCTGATGCCGAGGAGGGTTCATGCCACTCTCTGTTCTTCTCGACCACCGGCGTTTCATACGATGAGGTTGGGATTGTGTCGGAATCTCAGAGTCAGAGAGCTTCCTCTGTTTCGGATGATTGTTCCATCGTTGCCTTTGAGATTGGTCAGATTAACACGAGGAAGGTGCAATATTTGGTGGGTAAAGTAGACTTGGCGAGAGATTGTAGGATTTGTCATCTGGGTTTTGACGGTAACAGTCTTGAATCTGGTATTCCGATTGAATTGGGTTGTTCTTGCAAGAATGATTTAGCTGTTGCTCACAGGCACTGTGCTGAGCAGTGGTTCCAAATCAAGGGAAACAAGACATGCGAGATTTGCCATTCGGTCGCACGAAATGTTGTCGGAGGAGGAAATGGAGTTGGGTCAACAGAGGAATCTAACGGGGCTAATACTAATGGCTCATTGATAACAGGGAGTAGTGATAGTAATAGTATTAGCACGGCAGCACCATCCCAAGTTCCTCTGGCAGATAGCTGGAGCTTCTGGCGGGGCCACCGCTTCCTTAATTTTCTTCTAGCTTGTGTCGTTTTTGCTTTTGTTATATCTTGGCTCTTCCACTTCAACATGCCTGCCTAA | 699 | 46.92 | MSALEISHIDLEAGSDVGAEKDDSGFFSDAEEGSCHSLFFSTTGVSYDEVGIVSESQSQRASSVSDDCSIVAFEIGQINTRKVQYLVGKVDLARDCRICHLGFDGNSLESGIPIELGCSCKNDLAVAHRHCAEQWFQIKGNKTCEICHSVARNVVGGGNGVGSTEESNGANTNGSLITGSSDSNSISTAAPSQVPLADSWSFWRGHRFLNFLLACVVFAFVISWLFHFNMPA | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1932798 | 1934185 | - | Conep03aG0039500.1 | Cone3ag0384 | 433843 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0384 | 232 | PANTHER | ZINC FINGER, RING-CH-TYPE | 32 | 231 | - | - | |
| Cone3ag0384 | 232 | SUPERFAMILY | RING/U-box | 94 | 150 | - | - | |
| Cone3ag0384 | 232 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 88 | 154 | IPR011016 | GO:0008270(InterPro) | |
| Cone3ag0384 | 232 | CDD | RING_CH-C4HC3_MARCH | 96 | 148 | - | - | |
| Cone3ag0384 | 232 | SMART | ringv_2 | 95 | 148 | IPR011016 | GO:0008270(InterPro) | |
| Cone3ag0384 | 232 | Pfam | RING-variant domain | 96 | 147 | IPR011016 | GO:0008270(InterPro) | |
| Cone3ag0384 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 156 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag0384 | Cone-Chr3:1932798 | Cone9ag0302 | Cone-Chr9:1311704 | 5.95E-15 | dispersed | |
| Cone1ag1243 | Cone-Chr1:56066039 | Cone3ag0384 | Cone-Chr3:1932798 | 3.46E-52 | wgd | |
| Cone10ag0353 | Cone-Chr10:1675430 | Cone3ag0384 | Cone-Chr3:1932798 | 6.99E-88 | wgd | |
| Cone13ag1373 | Cone-Chr13:10010431 | Cone3ag0384 | Cone-Chr3:1932798 | 9.77E-70 | wgd | |
| Cone19ag1368 | Cone-Chr19:9052368 | Cone3ag0384 | Cone-Chr3:1932798 | 1.89E-63 | wgd | |
| Cone3ag0384 | Cone-Chr3:1932798 | Cone5ag0225 | Cone-Chr5:957190 | 7.52E-52 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0384 | - | - | - | 0.0 |