Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0419 ATGGCTGCCGCCACCACCACTACCGCCGCTACATCCTCTTTCATCGGAACCCGTCTTCCCGATGTCCGCTCAAGCTCGGGCAGAATCCAAGCCCGATTCGGTTTCGGACGCAAGAAAGGCCCAGCTCCCAGGAAAGCATCAAAGCCCACTACAGACCGCCCTCTCTGGTACCCAGGAGCTAAAGCACCCGAATGGCTTGACGGAAGCTTGGTAGGTGATTACGGGTTCGACCCATTTGGTTTGGGTAAGCCCGCAGAGTACCTTCAGTTCGACTTGGACTCTTTGGACCAGAACTTGGCTAAAAACTTGGCCGGTGATGTGATTGGAACCCGGTTCGAGAACGCGGAAGTAAAGTCCACTCCCTTCCAGCCTTACACTGAGGTTTTTGGTCTGCAGAGATTCCGTGAATGCGAGCTCATCCATGGAAGATGGGCCATGCTGGCCACTCTTGGTGCCCTCACCGTTGAATGGCTCACCGGCATCACCTGGCAAGATGCTGGAAAGGTAGAGCTAGTGGAAGGGTCATCATACCTTGGTCAACCTCTTCCATTCTCTATTACGACATTGATCTGGATCGAAGTCTTGGTGATCGGATACATTGAGTTTCAGAGAAATGCAGAGTTGGACCCAGAGAAGAGGTTGTACCCTGGCGGGAACTTCTTCGACCCCTTGGGTTTGGCTGCGGATCCAGAGAAGAAGGCGATCCTCCAATTGGCGGAAATCAAGCACGCCCGTCTTGCCATGGTGGCTTTCTTGGGCTTTTCTGTTCAAGCTGCCGCCACTGGCAAAGGCCCACTTAACAACTGGGCTACCCATTTGAGCGATCCACTCCACACCACCATCATTGACACATTTACTTCATCCTCTTAA 870 53.22 MAAATTTTAATSSFIGTRLPDVRSSSGRIQARFGFGRKKGPAPRKASKPTTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRFENAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGNFFDPLGLAADPEKKAILQLAEIKHARLAMVAFLGFSVQAAATGKGPLNNWATHLSDPLHTTIIDTFTSSS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2060046 2061020 - Conep03aG0043200.1 Cone3ag0419 433878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0419 289 MobiDBLite consensus disorder prediction 33 54 - -
Cone3ag0419 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 10 283 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cone3ag0419 289 Gene3D Chlorophyll a/b binding protein domain 56 289 - -
Cone3ag0419 289 FunFam Chlorophyll a-b binding protein, chloroplastic 103 287 - -
Cone3ag0419 289 Pfam Chlorophyll A-B binding protein 62 258 IPR022796 -
Cone3ag0419 289 SUPERFAMILY Chlorophyll a-b binding protein 45 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0419 Cone-Chr3:2060046 Cone5ag0333 Cone-Chr5:1408962 2.26E-40 dispersed
Cone1ag1220 Cone-Chr1:55986365 Cone3ag0419 Cone-Chr3:2060046 3.96E-141 wgd
Cone10ag0383 Cone-Chr10:1812105 Cone3ag0419 Cone-Chr3:2060046 2.63E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0419 K08915 - mtr:11422473 522.702