Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0420 ATGGCTTCCCAACGAGAACCATGGCTAATGGAGAATGGAAACGTCAAGGTGTTGAGCAAGGAGGTGAAGCACGGACGCACTGCTCATAACATGTCTTCCTCGTCTCTGCGCAAAAAGTCCGATCTCACTCTCGTCTCCAAGATTCAAAACGGTTGGCTTAGGCTTCTGCTCGTTAATCTTCAGGAGGTTATCTTGGGGACTAAACTCGCCGTTCTTTTTCCTGCGATTCCGCTGGCCATCGCCGCCTATTCATACGGTTTTGGAAGACCATGGATTTTTGCTTTGAGCTTGCTTGGGCTTACTCCACTTGCTGAACGTGTTAGCTTTCTGACAGAACAAATAGCTTACTTCACTGGTCCTACAGTGGGAGGGCTTCTAAATGCAACATGTGGAAATGCTACAGAGCTTATCATTGCTATACTTGCTCTAAGCCAACGGAAGATAGATGTAGTGAAGTATTCTCTACTGGGTTCTGTTCTTTCAAACCTACTTCTAGTCCTAGGGACATCTCTCTTCTGTGGTGGCATTGCTAATATTAGAGCCGAGCAGAAATATGACAGAAGGCAAGCTGATGTGAACTCACTGCTACTGCTGCTATCACTGTTGTGCCACTTATTGCCCTTGTTGTTTCATTATGCTGGAGGCTCCGCTTCTGTTACAGCACAACCCACTCTACAGATGTCAAGAGCTTGCAGCATCGTAATGCTCTTGGCTTACATAGCTTATCTCATCTTCCAACTCTGGACACACCGCCAACTATTTGAAGCACAAGAGGAAGCGGAGGAGGACAGCGACACGCTGGAAGAAACAGCTGTCATTGGATTCTGGAGTGGCTTTGCATGGCTGGTCGGAATGACGGCTGTCATTGCTTTGTTGTCTGAGTACGTGGTTGCAACAATTGAGGATGCATCTGATTCGTGGGGTTTGTCCGTAAGCTTTCTGAGCATAATACTGCTACCGATTGTGGGAAACGCAGCAGAGCATGCAGGAGCAATTATTTTTGCTTTCAAGAACAAGTTGGATATTTCTCTGGGTGTAGCTCTGGGTTCTGCTACGCAAATCGCCATGTTTGTTATTCCATTGTGCATCGTTGTCGCATGGATTATGGGCATCAACATGGATCTTAACTTCAACCTCCTCGAAACTGGTTCACTTGCTCTTGCAATAATCGCCACTGCCTTCACCTTACAGGATGGGACTTCTCACTACATAAAAGGACTTGTTCTTCTACTCTGCTACATTGTCATTGCAGCCTGCTTCTTTGTATACAAGACACCGTCGGGTAATGTCATCAACTTGGCACTTACATCACCAGAGAACGCAGCCTTCCAGGCTTGA 1338 46.56 MASQREPWLMENGNVKVLSKEVKHGRTAHNMSSSSLRKKSDLTLVSKIQNGWLRLLLVNLQEVILGTKLAVLFPAIPLAIAAYSYGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALSQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANIRAEQKYDRRQADVNSLLLLLSLLCHLLPLLFHYAGGSASVTAQPTLQMSRACSIVMLLAYIAYLIFQLWTHRQLFEAQEEAEEDSDTLEETAVIGFWSGFAWLVGMTAVIALLSEYVVATIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVIPLCIVVAWIMGINMDLNFNLLETGSLALAIIATAFTLQDGTSHYIKGLVLLLCYIVIAACFFVYKTPSGNVINLALTSPENAAFQA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2063062 2065684 - Conep03aG0043300.1 Cone3ag0420 433879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0420 445 Gene3D - 120 261 IPR044880 -
Cone3ag0420 445 Gene3D - 265 422 IPR044880 -
Cone3ag0420 445 FunFam Vacuolar cation/proton exchanger 266 422 - -
Cone3ag0420 445 Pfam Sodium/calcium exchanger protein 91 248 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0420 445 Pfam Sodium/calcium exchanger protein 278 421 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0420 445 FunFam Vacuolar cation/proton exchanger 120 264 - -
Cone3ag0420 445 Coils Coil 250 270 - -
Cone3ag0420 445 NCBIfam calcium/proton exchanger 74 421 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cone3ag0420 445 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 20 426 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0026 Cone-Chr17:185953 Cone3ag0420 Cone-Chr3:2063062 8.49E-113 dispersed
Cone3ag0420 Cone-Chr3:2063062 Cone8ag1353 Cone-Chr8:10849714 1.39E-107 dispersed
Cone10ag0385 Cone-Chr10:1817511 Cone3ag0420 Cone-Chr3:2063062 1.24E-294 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0420 K07300 - csv:101213857 671.003